Manihot esculenta (cassava): 110604611
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Entry
110604611 CDS
T05761
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110604611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110604611
03016 Transfer RNA biogenesis [BR:
mesc03016
]
110604611
03029 Mitochondrial biogenesis [BR:
mesc03029
]
110604611
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
110604611
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
110604611
Transfer RNA biogenesis [BR:
mesc03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
110604611
Mitochondrial biogenesis [BR:
mesc03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
110604611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POPLD
POP1_C
POP1_N
Motif
Other DBs
NCBI-GeneID:
110604611
NCBI-ProteinID:
XP_043808486
LinkDB
All DBs
Position
17:complement(27634069..27639833)
Genome browser
AA seq
897 aa
AA seq
DB search
MSLSFTKLGSIRLHPKLTDISCILCRSLICSAPNLKPLLTIISLKVKVTLPMAGDGSKRS
EVSAIPPRKINVQKFVESRTFELETLHSIVSDRLNNDFRSRRNKRRRTTAYDNQNAKKRN
KRRKCGIAVDKSNNVALEQNQERLPPRRVRRRVELRRNSRSGFSTSSEGTKRLRTYVWHS
KRFTMTKLWGFHLPLGLQGRGRGSRALLKWYKHGALVHDASYYTAVQLEGPEDSLTSIIR
MVLEPSSSTQSEEITNTILSGCIYGTAMLHHVGALSELIAPVTYMWRPYHLPNGENSGSH
CNSDGCNELTSSESFSSHRQLWVLIHASAFNEGYDALKFACQKHMSESGILINCISLEGE
LAKLEVMGSKAFQLLQKILHPVYCDSKNSWQLRKCAVEDADHDSKLKNPSILENEENMSS
CSMFPFTVRDPRAMSETKIGDVSVAAATTMNYVSEDEPRKDVTTLGNPEKSEDLLWQPCS
KPEGDSSFSNKGDLWDAACRISLPVEDNVLCLEKHRLRMDFVCLDDAKSGMPSTAVEVHG
SRSCPIVLLKHNNGMGSFMGWSIIMPLCWVKVFWISFISNGARAIGLREKRWIACEVGLP
FFPSDFPDCNSYLSSKAIESAAIDQKAERLCPAVRSLKVPVPPPWNSVRIAVQVASSSHA
KDMIGGNSMSIIRCDHSDITSLRVDGNSFDGIVARTSNMLADFMNEIYGDCSLLFPQAPN
KRMKFLESINDESKLGQLQNGIRRMNSNRQLCFVRVLLHAYKKGVFEEGAVVCAPCLSDV
SLLTSRSENNEAGFQIPTSVVRAYFKEQSNSAAEESHGWPIGFVTTGFVRGSKKPMAEAF
CEAVLLAHLREEQWNEIPVKKRRKEIYVLVRNLRSSAYILAMASVILEQHQDDMEFL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgagctttacaaaactcggctcgattcgattacatcccaaattaacagacatc
agttgtattctttgccgctctctcatatgctcagcgcccaaccttaagccattgctgact
atcatcagcctgaaggtaaaagtaacacttccaatggctggagatggaagcaaaagaagt
gaagtctcagcaattccgcctcgaaaaatcaatgtgcagaaatttgtagaatcgcgcact
tttgagctcgagactcttcactcaatagtatcagaccggttgaacaacgatttccgatct
cgaagaaacaagagaagaagaaccactgcgtatgacaatcaaaatgcaaagaagagaaat
aaaaggagaaaatgtggaatagctgttgataaaagcaataacgtggctttggagcaaaac
caggaaaggcttcctcctcgtcgcgttcggcggagagttgaacttagaaggaattctaga
agtggtttctctacttccagcgaagggacgaagaggctcagaacgtatgtttggcattcg
aagaggttcacaatgacaaagctgtggggtttccaccttcccctgggtttgcagggcaga
ggaagggggtctcgagctttattaaagtggtacaagcatggggctcttgtgcatgatgca
agctattatactgctgtccagttggagggtccagaggattcattaacgtcaatcataagg
atggtgctcgagccttcttcatcaactcaatctgaggaaattacaaatactattctttct
ggttgtatctatggaaccgccatgcttcatcatgttggagctctttctgagttgatagct
cctgtgacttatatgtggcgaccttatcatcttccgaatggagaaaacagtggtagtcac
tgtaattctgatggatgcaatgagttgacaagttctgaatcattttcttcccatcgccag
ctttgggtgttgatacatgcttcagctttcaatgagggatatgatgctctaaaatttgct
tgtcagaaacatatgagtgagagtggcatcttgatcaattgcatttcacttgaaggcgaa
cttgcaaaattagaggtaatgggatcaaaggcatttcaacttcttcaaaagatattacat
cctgtttattgtgattcaaagaattcctggcaactgaggaaatgtgctgttgaagatgcg
gatcatgattccaagcttaagaatccttctatactagaaaatgaggagaatatgtcttca
tgttctatgtttccttttacagtcagggatcctcgagcaatgtctgagacaaagataggt
gatgtttctgtggcagctgctaccacaatgaattatgtgtctgaagatgaacctagaaag
gatgtcactacactgggaaatccagaaaagagtgaagatttactttggcaaccatgttca
aaacctgaaggggatagcagtttctctaacaaaggggatctgtgggatgcagcttgcaga
ataagtctccctgtggaagataatgttctttgcttggaaaaacatcgtttacgtatggat
ttcgtttgccttgatgatgcaaaatcagggatgccgagtactgcagttgaggttcatggt
tcaagatcttgccctattgttcttcttaaacacaacaatggaatgggctcattcatggga
tggtcaataataatgcccttgtgctgggtcaaggtcttttggatatctttcatctccaat
ggagctcgtgccataggtcttagagagaagcgatggattgcatgtgaagtagggttaccc
ttttttccttcagattttcctgactgtaattcatacctctcttctaaggcaattgaaagt
gctgccatagaccaaaaagcagaacgactatgtcctgctgtaagatccttgaaagtgcct
gttccacccccatggaacagcgtccgcattgctgtgcaagtggcttcaagttctcatgca
aaagacatgattggtggcaattcaatgtcaatcattagatgtgatcatagtgatataaca
tcactcagggttgatggtaactcatttgatggaattgtagcaaggacatccaatatgttg
gctgattttatgaatgaaatatatggtgattgttcacttttattccctcaagctccaaac
aagaggatgaagtttctagagtctatcaatgatgaaagtaaacttggtcaacttcaaaat
ggtattaggcgaatgaattctaaccgtcaattgtgctttgttagagttcttctccatgca
tataaaaaaggtgtttttgaagagggagcagttgtatgtgcaccttgtctcagtgatgtg
tcactattgacttccaggtcagaaaataatgaggctggttttcagattcctacctctgtg
gtgagggcatacttcaaagagcaatctaactctgctgctgaagagtcccatgggtggcct
attggttttgtcacgacaggatttgttcgagggagcaagaagccaatggcagaggccttt
tgtgaagcagttttactagcgcatcttagggaagaacagtggaatgagatacctgtaaag
aagaggagaaaagaaatatatgtgcttgtcaggaacttgagatcttcagcatatatactt
gctatggcatcagttatcttggaacaacaccaagacgatatggagttcttgtga
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