Manihot esculenta (cassava): 110604775
Help
Entry
110604775 CDS
T05761
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110604775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110604775
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110604775
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
110604775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
110604775
NCBI-ProteinID:
XP_021598770
LinkDB
All DBs
Position
17:4716981..4722239
Genome browser
AA seq
321 aa
AA seq
DB search
MREIQLSLNQTQKIRLQKALQKLESMHSKANSDASVTVADTIPISLEDNILKGHGTAERN
GEVVATVCGVVERVNMLVYVRALRSRYKPEIGDIIVGRVVEVAQKRWKLEINYNQDAVLM
LSSMNLPDGIQRRRTAVDELNMRNVFEENDVICAEVRNFQNDGSLQLQARSQKYGKLEKG
QLLKVPPYLVKRQKQHFHHLVQYGVDLILGCNGFIWVGEHCDARDSLPEEQSNQTDEQTT
KSTRVSETMPLETRQHICRVANAVRVLSTLGFSLTLEVIMEAFNLSRTLNLGIDEMLGSE
FHVLVAEKEAERRSSLTKKKR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaatacaactatccttgaatcagacgcaaaagatacgactacagaaagccctg
caaaagctagagtctatgcattctaaggccaattctgatgcttccgtcactgtcgccgat
accatcccaatcagccttgaagacaacattctcaaaggacatggaaccgcagagcgcaat
ggtgaagtggtggctactgtttgtggagtggtggagcgtgttaacatgcttgtctatgtt
cgcgctttacgttccaggtacaagccagagattggagatatcatagttggccgtgttgtt
gaggttgctcaaaagcgttggaaattggaaataaattacaaccaagatgctgttttaatg
ctttcttcgatgaacttgcctgatggtattcagaggcggcgaactgcagtggatgaactg
aacatgcgtaatgttttcgaggagaatgatgttatctgtgctgaagttcgtaattttcag
aatgatgggagtttacagctgcaagcaagaagtcagaagtatgggaagcttgagaaggga
caattgctgaaagtccctccttatctagtgaaaagacaaaaacagcatttccatcatctg
gtgcaatatggagttgatttgatacttggatgtaatgggtttatatgggttggtgaacat
tgtgatgccagagacagtcttccagaagagcaatcaaaccagactgatgaacaaactacc
aaatccacaagagtttctgaaaccatgccactggagacgagacaacacatttgcagggtt
gcaaatgctgtccgtgtactttcaactttgggattcagtttaactttagaagtgataatg
gaggcgtttaacttgagtaggactttgaatcttggtatagatgagatgcttgggtcagag
ttccatgttttggtagcagagaaagaggctgaacggcgcagttcattgacaaaaaagaag
aggtga
DBGET
integrated database retrieval system
