Manihot esculenta (cassava): 110605048
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Entry
110605048 CDS
T05761
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mesc01009
]
110605048
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110605048
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
110605048
Protein phosphatases and associated proteins [BR:
mesc01009
]
HAD phosphatases
Fcp/Scp phosphatases
110605048
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
110605048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
dsrm
Motif
Other DBs
NCBI-GeneID:
110605048
NCBI-ProteinID:
XP_021599038
LinkDB
All DBs
Position
17:23671024..23678804
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AA seq
909 aa
AA seq
DB search
MYKSAVYIGEELLGEVEIYPQQLQHEQEEEENRNNNKRVIDEILTEKEIRISHFSQPSER
CPPLAVLHTITCGMCFKMESKNSVSLDTPLHLLHSSCIQENKTAVVSLGEGELHLVAMYS
RNDENQYPCFWGFNVSAGLYDACLVMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALQR
KISTEVDPQRLSGMLSEVKRYQDDKTILKQYVENDQVIENGRVIKTQFEVVPALSDNHQT
IVRPLIRLQERNIILTRINPQIRDTSVLVRLRPAWEELRSYLTARGRKRFEVYVCTMAER
DYALEMWRLLDPESNLINSKELLDRIVCVKSGSRKSLFNVFQNGICHPKMALVIDDRLKV
WDEKDQPRVHVVPAFAPYYSPQAEASNAVPVLCVARNVACNVRGGFFKEFDEGLLQRMSE
ISYEDDMNDIPSPPDVSNYLVPEDDAANSNGHKDPLLFDGIADAEVEKRLKEALSASSTF
PSTAANVEPKLVPPLQYTLAPSSSSTPVPTSQQSVMPFPSVQFPQPSSLVKPLAPVGPPE
PSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDHVPSESQFPVRPPMQVSVPGVQ
SHGSWIPAEEEMSPRQLNRAVPREFALDSEPMHSEKHRPHHPFFFPKVENPVPSDRMLHE
NQRFPKVLQAPYRDDRLRINHAISSYHSFSGEEIPLSQSSSSNRDLDFESERAVSSAETP
VGVLQEIAMKCSAKVEFRPSLVDSRDLQFSIEAWFAGEKVGEGIGRTRREAQSLAAESSI
RSLANLYMSRAKPDNGDASRYSSANDNGYLGNVNSFGSLPLPKDEPVSSSAALDPSRLLD
PRLEGSKKSMGSVTPLKEFASFKEFSPKRQGSPRQFQGMSNKRLKSEFPRALQRMPSSAR
YPKNASPVP
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtataaatcggcggtgtatataggcgaggagttactgggagaagtagaaatatatcca
caacaactgcaacacgaacaagaagaagaagagaaccgcaacaacaacaagagggtcata
gatgagatattgacggagaaggaaatcagaataagccacttctcgcaaccgagcgagagg
tgtcctccactagcagtgctacataccattacatgtgggatgtgcttcaaaatggagtcc
aagaattcagtctctcttgacacgccgcttcatcttttgcactcctcctgtatccaggaa
aacaagactgctgtagtatcactcggagagggagagcttcatctggtggcaatgtattca
agaaacgatgaaaatcagtatccatgcttctgggggttcaacgtttcagcagggctttat
gatgcttgtcttgtcatgctgaatctcagatgccttggcattgtatttgatcttgatgag
actcttattgtcgcaaatacaatgcgatcttttgaagatagaatcgaggctctgcagcgg
aaaataagtactgaggtggacccacagcgtctttctggtatgctgtcagaggtaaagcgt
tatcaggatgacaaaaccattttgaagcaatatgtggaaaatgatcaggttatcgaaaat
ggaagggtgattaaaactcagtttgaggttgttcctgccctgtctgacaaccaccaaacc
atagtccgtccgttgatacgattacaagagaggaatattattttgacgcgcatcaatcca
cagattcgtgatacaagtgtccttgtgaggttgagacctgcatgggaagaactgagaagt
tacttgactgctagaggacgcaaacgttttgaggtttatgtttgcacaatggctgaaaga
gattatgctttagaaatgtggaggcttcttgatccggagtcaaacttgataaactcaaaa
gaattattggatcggattgtgtgtgtcaagtctggttccaggaagtcattgttcaatgtt
tttcaaaatggaatatgccatcctaagatggcgttggtgattgatgatcgcttgaaagtg
tgggatgagaaagatcaacctagggtgcatgttgttcctgcatttgctccatattattct
ccacaagctgaagcaagtaatgctgttccagtcttgtgtgttgcaagaaatgttgcctgc
aatgtcagaggtggattctttaaagaatttgatgagggtctattacaaagaatgtctgag
atttcatatgaagatgatatgaatgacatcccttctccccctgatgtgagcaactattta
gttccagaggatgatgctgctaactcaaatggacacaaagatccacttttatttgatggc
attgcggatgctgaggttgaaaaacgactaaaggaagcactttcagcttcttcaacgttt
ccttcaacagctgccaatgtagaaccaaagcttgttcctcctcttcagtacacattggca
ccttcttcaagttcaactccagtgccaacatcacagcaatcagtaatgccatttccaagc
gtgcagtttcctcagccatcttcattagttaaacctttggctccagttggtcctccagaa
ccaagtttgcaaagttctcctgctagagaagagggcgaggtgccagaatcagaattagat
ccagatacaaggaggcggcttcttatattgcaacatggacaagatactagagatcatgtg
ccaagtgaatcacaatttcctgtaagacctccaatgcaagtttcagttccaggagtgcaa
tctcatggaagctggattccagcagaggaagaaatgagtcctaggcaactgaaccgagca
gtacctagagaatttgctctggattccgaaccaatgcacagtgaaaaacaccgacctcat
catccattcttttttcccaaggttgagaatcctgtgccgtcagatagaatgcttcatgag
aatcaaagatttccaaaagtgttgcaggcaccatacagagatgatcgattgaggataaac
catgcaatatccagttatcattctttctcaggtgaggaaataccattgagtcaatcatct
tccagcaacagggatcttgattttgaatctgaacgagctgtttcaagtgcagaaactcca
gttggagtgttacaggaaattgcaatgaagtgtagtgccaaggtggaattcaggccttca
ttggttgatagcagagatctgcagttctccattgaggcttggtttgcgggagagaaagtt
ggtgaagggattggtagaacaagaagggaagcccaaagtcttgcagctgagagttctatt
agaagcttggcaaacttgtatatgtcacgagcaaagccagataatggggatgcaagtaga
tattcgagtgcaaatgacaatggttatttgggtaatgtgaattcctttgggagtctgcca
ttgccaaaagacgagcctgtctcatcttctgctgccttagacccttctaggcttctggat
ccaagattggaaggctctaagaaatcaatgggttcagttactcccctcaaagaatttgca
agtttcaaggaattttcaccaaaacgtcagggttcccccaggcaatttcaagggatgtcg
aataaacgtttaaaatcagagtttccaagagctctgcaacgcatgccttcgtctgctaga
tatcccaagaatgcttctcctgttccttga
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