KEGG   Manihot esculenta (cassava): 110605126
Entry
110605126         CDS       T05761                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110605126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110605126
   03041 Spliceosome [BR:mesc03041]
    110605126
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     110605126
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     110605126
Spliceosome [BR:mesc03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    110605126
SSDB
Motif
Pfam: RRM_1 RRM_7 DACND RRM_10 UPF0158
Other DBs
NCBI-GeneID: 110605126
NCBI-ProteinID: XP_021599148
LinkDB
Position
17:complement(25243278..25245983)
AA seq 387 aa
MDFTKKRKADENGTAIIPTLSTAATSTALTPQDIRKVIDPFTKEQLLDILQSAAVHHSDV
LDSIRTIADGDISLRKLFIRGLSTNTTTETIRNLFASYGELEEAVVIFDKNTGKSKGFGF
ITFKHVDGALIALKEPSKKIDGRMTVTQLASAGLSNSGSSGGDVWSRKIYVGNVPYDIPS
ERLLGFFSTYGEIEEGPLGFDKATGKSKGFAFIIYKNEEGAKAAIADPMKIIDGHQVLCK
MAVDNKKAKTEGGVVGDNAQSQPPPQPQSSMPGSQYGVPGSVPPYGGFSGMGSNGYGLNS
SLPGPIAGGGYGGPYGVSQYGGPSAGEFGGLNNAANSMYRIPPSSVGMPSGGYPDGAPYG
LSQQHQPSSLPPRIPPGGMYQGMPPYY
NT seq 1164 nt   +upstreamnt  +downstreamnt
atggacttcacaaagaagcgcaaagccgacgaaaatggcactgcgataatccctaccctt
tcgaccgccgccacctcaaccgctttaaccccacaagacatccgtaaggtaatagaccct
ttcacaaaggagcagcttctcgacatcctccaatcagctgcagttcatcactccgacgtc
cttgactccatccgaacaattgccgacggcgacatctccctccgcaagctcttcatcagg
ggtctgtccaccaacaccaccaccgagaccatccgcaatttgtttgcctcttacggcgag
cttgaggaggccgtcgtaattttcgataagaacaccgggaaatcaaagggatttgggttc
atcacatttaaacatgtagatggtgctttaattgcattgaaggaacccagtaagaaaatc
gacggcaggatgactgtcacccagttggcctctgccgggctatctaattctggttctagt
ggtggcgatgtttggtcaaggaagatttatgtcgggaatgtcccgtatgatataccttca
gagagattgttagggtttttctcgacgtacggagagattgaagagggacctctagggttt
gataaggcgacgggtaaatcaaaaggttttgcttttattatatacaagaatgaggagggc
gcaaaagcagctattgctgatccaatgaagattatcgatgggcatcaagttctctgtaaa
atggccgttgataacaaaaaagctaagaccgaaggtggtgtggttggcgataatgcacaa
tcacagccgcctccacaaccacagtcttcaatgcctggatctcagtatggtgttccaggt
agtgtgccaccctatggagggttttcaggaatgggcagtaatggatatggtttgaattct
tcattgccaggtccgattgctggtggaggctatggtggtccatatggtgtttcacagtat
gggggaccaagtgctggtgaatttggtggactgaacaacgctgccaattcaatgtatagg
atacctccgagttccgttggaatgccttcaggaggatatccagatggtgccccttacggg
ttgtctcagcaacatcagccatcatcattgccccctagaattccacctggaggcatgtat
cagggcatgccaccatattattga

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