KEGG   Manihot esculenta (cassava): 110605239
Entry
110605239         CDS       T05761                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X2
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
mesc  Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:mesc04812]
    110605239
Cytoskeleton proteins [BR:mesc04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     110605239
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 eIF2A Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 110605239
NCBI-ProteinID: XP_021599349
LinkDB
Position
17:complement(23269431..23278566)
AA seq 1031 aa
MAKRGYKLQEFVAHSTNVNCLSIGKKACRLFITGGDDHKVNLWAIGKPTSLMTLCGHTSP
VESVAFDTAEVLVLAGASTGVIKLWDLEEAKMLRTLTGHSSNCTAAEFHPFGEFFASGST
DTNLKIWDIRKKGCIHTYKGHTRGISTIRFTPDGRWVVSGGFDNVVKVWDLTAGKLIHDF
KFHEGHIRSLDFHPLEFLLATGSADGTVKFWDLETFDLIGSTRPEATGVRTITFHPDGRT
LFCGLDDSLKVYSWEPVIFHDAIGIGWSTLGDLCINEGKLLGCSHYRNSVAVWVADISLI
EPYGVGFVPEESDCAEKKFNISKSDSPVKARTGERSASDLRSISPEYEIKEIKNIYVDST
GGIPVSSQKAGSLSSPNMVLPVDSKEMINPPTEKKSSTIEVTGKASGEALNKSFVVPTVV
PRDSAVDNNSSNSGRGTVTFSRTKPGMLLRPAHIWRPSNSKNDVEKLSVALESETSSSVT
SEKESAMDLKSQSLHVSEDGIQNSCEENKSTIKSVADKFEKILSPETPTCQENCDESIAN
SNKGIPSVKIVNGVAVVAGRTRSLVERFERREKFSSEDQSINMASQVAHETNRISNINPG
AAKETDIKPPTATSVSSLVMPENDRKPPTAINTSPLVMPETDRKPPTSVNVTPHFMPETD
RKPPTSANVPPHFIAEIDRKPSTETNMTTHVIPETDRKPPTATNMPAHAMPETKSKPVIA
TNMTLGFMPEMGRTPAKGTALTPRAICERDRKPTTTTNVNPRVVPETDRSPPIATEVTPR
VIRGMDRAPSMLEEPQISGSEPVCSSYRDISEDLMRTHDVFLSTLKSRLTKLQVVRHFWE
QNDIKGAINGLRKLQDPSVQADVISILMEKMEILTLDLFSCLLPVLVGLLESKMERHTSV
SLEMLLKLVAVFGPIVRSTISAPPAVGVDLHAEQRLECCKQCFVQLQNIQQILPLVTRRI
SGKIGSRIESSSSRIIAKARHWKSLPAASLRVLRRQYPNCTMQCYSFHVSLGTSQFCHAA
SYFLAVHIGLF
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggcaaaacgtggatataagctgcaagaatttgtagctcattccaccaatgtaaattgc
ttaagtatcgggaaaaaggcatgtagactttttattacaggcggcgatgatcacaaagtc
aatctttgggcaattggaaaaccaacttctttaatgaccttgtgtggtcacacaagccca
gttgaatctgtagcttttgacacagcagaagttttggttcttgctggagcttccactggg
gtgataaagctttgggatttggaagaagcaaaaatgcttcgcactcttactggacacagc
tcgaactgcactgcagctgagtttcatccatttggcgagttctttgcatctggttcaaca
gacacaaatctgaagatctgggatatcagaaagaagggatgcattcatacatacaagggt
catactcgaggcattagtactattagattcactcctgacggtcgctgggtggtttctggt
ggatttgacaatgttgtaaaggtatgggatcttactgctggaaagcttatacatgatttt
aagtttcatgaaggacatattagatccttagattttcatcccctcgaatttctcctggcc
acaggttcagcagatggaactgtgaagttctgggacttggaaacttttgacttgattggg
tctaccagaccagaggccactggagtacgcacaattacctttcatcccgatgggaggaca
cttttttgtggattagatgattctttgaaggtttattcttgggagcctgtaattttccat
gatgccattggtattgggtggtctacacttggtgacctctgcattaatgaaggaaaactt
ttgggttgctcgcattatcgaaattctgtggcagtttgggtagcagatatatcgcttatt
gagccatatggagttggttttgtaccggaagaaagtgattgtgcagagaaaaaatttaac
atctccaaaagtgattctcctgttaaagcaaggactggagaaagatcggcttcagattta
cgctctatatctcctgagtatgagatcaaagaaataaagaatatatatgtagactctact
ggtggaattcctgtttcttcacaaaaagctgggtctttgagttcaccaaatatggtcctc
ccggtggattccaaggagatgattaatccaccaacagagaagaaaagttccacaatagaa
gtgactggaaaagctagtggggaagcacttaataaatcttttgttgtgcccactgttgta
cctcgggacagtgctgttgataataactcttctaattctggaaggggaacagtcactttt
tcaaggacaaaacctggcatgttgctcaggccagctcatatttggaggccatcaaatagc
aagaatgatgttgagaagctatcagtagctcttgaatctgaaacttctagcagtgtgacg
agtgaaaaagagagtgcaatggatctgaagtcgcaatctctgcatgtatcagaagatggg
atacagaattcctgtgaggaaaataaatctactattaagagtgttgcagataagtttgaa
aaaattttatccccagagacacccacgtgtcaggaaaattgtgatgaatccattgctaat
agcaataaagggatcccctccgttaaaatcgtcaatggagttgctgttgtagcgggcagg
acacgctctctggttgagagatttgaaagacgagagaaatttagcagtgaagatcaatca
atcaatatggcttctcaagttgcacatgaaacaaataggatatctaatatcaaccctggt
gctgcaaaagaaactgatataaaacctccaacagcaaccagtgtgagctctcttgttatg
cctgaaaatgatagaaaacctccaacagcaatcaatacaagccctcttgttatgcctgaa
actgatagaaagcctcccacttcagtgaatgtgacacctcattttatgcctgaaactgat
agaaaacctcccacttcggctaatgtgccaccacattttatagctgaaattgatagaaaa
ccttccacagaaactaatatgaccactcatgttatacctgaaactgatagaaaacctccc
acagcaactaatatgcccgcccatgctatgcctgaaaccaagagtaaacctgtcatagca
actaatatgactctgggttttatgcctgaaatgggtagaacacctgctaaaggaactgct
ttgacccctcgtgccatatgtgaaagggatagaaaaccaaccacaactactaatgtgaat
cctcgagtcgtacctgaaacagatagatcacctcccatagcaactgaggtgactcctcgt
gtcatacgaggaatggatagagcaccttccatgctggaggagcctcagatttctggcagc
gaaccggtttgttctagttatcgagatattagtgaagatttgatgcgaactcatgatgta
ttcttgagtacccttaaatcccgcttgacaaaattacaggtagttagacacttttgggaa
cagaatgacattaagggtgctatcaatggtttaagaaagctgcaagatccttctgtgcaa
gcagatgtaatcagtatccttatggagaaaatggagattcttaccttagatctattttct
tgcttacttcccgtgcttgtgggcttactggagagcaagatggaaaggcacacaagtgtc
tcattggagatgctactgaagcttgtagcagtctttggcccaatagtacgctcaaccatt
tctgctcctccagctgttggtgttgatcttcatgcagagcaaaggctagaatgttgcaag
caatgttttgtccagctgcaaaatatccaacaaattcttccactagttacaaggcggatt
agtggcaaaatcggctctagaattgaatctagttcttcgaggatcatagccaaagcccgc
cattggaagtcgcttcctgctgcaagtctcagagtactgcgcaggcaatatcctaactgc
actatgcaatgctattccttccacgtgtcattgggcacctcacaattttgtcatgctgct
tcttactttttggcagtccatatcggccttttttag

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