Manihot esculenta (cassava): 110605376
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Entry
110605376 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17 isoform X2
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110605376
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110605376
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
110605376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
HHH_5
Cdd1
DNA_pol_lambd_f
IMS_HHH_1
AAA_22
HHH
Motif
Other DBs
NCBI-GeneID:
110605376
NCBI-ProteinID:
XP_021599617
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All DBs
Position
17:complement(32216047..32224579)
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AA seq
1244 aa
AA seq
DB search
MDSYTLKSVSDLPAPFRSIFNFRYFNSLQSECFPVCFHSNVNMVISAPTGSGKTVLFELC
ILRLLSRFISEGRFIHIKGTLKTIYIAPSKALVQEKLRDWNQKFGSLGINCLELTGDNEF
YSIRTVQEADIILTTPEKFDAVTRYRIKDGGLGFFSDIALLLIDEVHLLNDPRGAALEAI
VSRIKMLAHNPEMKSSSLSCIRFLAVSATIPNIEDIAEWLSVPAQGIKRFGEEMRPVKLT
TKVFGYTPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQTVMTF
GYSNPFIKDKEQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLVEGLFLRGDI
QILCATNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGM
VIIMTRRETVHLYENLLNGCELVESQLLSCVTEHLTAEIVQLTVSDIARAIEWMKCSYLY
VRMKKNPEKYAVRKGISRDRIEKHVQEISVQKVNELSHHQMIKTGEDGFLLKPLEPGRLM
TKYYLKFDTMKHIMQTPDNCRLEDALNVICRAEEIAWIQLRRTEKKLLNDINIDKDGRLR
FHVNGDKGKRKKRIQTREEKIFVLANDCLTGDPSVHDLSLTQDMNSICSNGCRIAKCMKE
FFIFKKNYKGAVNSTILAKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFDELAE
ADPRRIEIVTGRKFPFGNHIKDSLLSLPPKVSISIEETVCQRQGKSKLVVTFARLSQSIQ
SGKRHYADMIIGTEEENLIHFHEKIRVDEFTSPYSTTVLLSIPKGSKLTVKAELIFEEYI
GLDIHKNLVLLKDNNSDMNYKRRQKRPSLFPPPAEICLIEDDNETISYASAEKLCNLTKS
KTENSSMPTFKLIDEELEEGEHAVEIKKESHKVITEQAIFDHIREKAKNFPLLTPAKTSS
STSSEALISTRKHSYEKDLDLDTELIVIEEIEGSKIPQQIVPNPSSEIREVEQNLFNVNN
HLTPKQGSMCGSLGTVNFLDYKGGHPSEPEKSILKCLTEETIFGHIRERANNFPVLSRTM
QSESPMWTKEQATENQPDFCIAASNALIEIKSDNKIMRDVVIISDLEPGGAVMNECSSRA
GAKGKENKSPRSPYAAYESLSISPKVPRINNNPPSMEILSFDISMIKDNTGSVGSASSLE
YNRKHQHQHCSPNGSKRQCCSTAMADKTREVDTFHGFESVFSFL
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggattcatatacgctgaagtctgtgtcagatttgccggcaccatttcgttcaattttt
aatttcaggtactttaattcactgcaaagtgaatgctttcctgtctgtttccattccaat
gtaaatatggttatctcagcaccaactggaagtggtaaaacagtgctctttgagctttgt
atactgaggcttctctcaaggttcatatcagaagggaggtttatccacatcaagggaact
ctcaaaacgatctacatagcgccatctaaggctttagtacaggagaagctccgtgactgg
aatcagaaatttggatcattggggataaattgcctggagttgacaggggataatgaattt
tacagcataaggactgtgcaagaagcagatattattctaactactcctgagaaatttgat
gctgtgactcgatatcgcataaaggatggtggcttgggctttttcagtgacattgcactc
ctacttattgatgaagttcacctactgaatgatccacgtggagcggctttggaggcaata
gttagtagaataaaaatgcttgctcataaccctgaaatgaaatcaagttctctatcatgt
atccgttttcttgcagtttcagccacaattccaaatattgaggacattgctgaatggctt
agtgtaccagcccaaggaattaaaaggtttggagaagaaatgaggcctgtaaagttaaca
actaaagtttttggatacaccccagcaaagaatgattttctatttgaaaagcgccttcaa
aactatatatttgatattctgatgcaatattcaagagggaaatctgctcttgttttttgt
tcaactcgaaaaggagcacaagaagcagcacagagactatctcagacagtaatgaccttt
ggctattcaaatccattcattaaagacaaagaacagcaggaaaggttaagggaagcttca
ctatcatgcagtgataaacaaatgcaatcttatatcctttatggtgttggttatcacaat
ggtgggctttgcttgaaggatcgcaaccttgttgagggtctctttctcaggggtgacatt
caaattctgtgcgcaacaaacacccttgcacatggaatcaacttaccagcacacacagtg
gtcataaaatcaacacagcactttaacaaggaaaaaggtctttacatggaatatgaccga
tctacaatactgcagatgtgtgggagggctggtcgacctccattcgacgacacaggaatg
gttataataatgacaagaagagaaacagtccatctgtacgagaatctcttaaatggatgt
gaattggtggaatcacaattgctctcatgtgtgacggagcacttgactgcagagatagtt
cagttgactgtttctgatattgcgagggcaattgaatggatgaagtgctcatatttatat
gtgaggatgaaaaagaatcctgagaaatatgcagtgcgaaaagggatttctagagaccgc
atagagaagcatgttcaagagatttctgttcagaaagttaacgagttatcacaccatcaa
atgatcaagaccggagaagatgggttccttcttaagccactagagcccggaagattgatg
accaagtactatttgaagtttgatacgatgaaacacattatgcagaccccagataactgc
aggttggaagatgcacttaacgttatatgccgtgcagaggaaattgcttggatacaactc
aggcgcactgagaagaagcttctaaatgacatcaacattgataaagatggccggcttcgc
tttcatgtaaacggtgataaggggaaacggaaaaagcgtattcaaactagagaagagaag
atatttgttctggcaaatgactgcctgactggggatccctcggtgcatgatttatcccta
actcaggacatgaattctatatgctcaaatgggtgtagaatcgcaaagtgcatgaaagag
ttttttattttcaaaaagaattataaaggagctgtgaactcaaccattttagccaaatca
ttataccagaaactctgggatgacagtccatacttgctcaagcaattgcctggcattgga
atggtgacagcgaaggctctgcattcaatgggaattaagtcatttgatgaactagctgaa
gctgatccaaggagaattgagatagttactggccgaaaattcccatttgggaaccacatc
aaggattctttgctgtcattacctccaaaagtcagcatcagcattgaggaaactgtttgc
cagaggcaagggaaatccaagctagtagtgacattcgctaggttatcacaatccatccaa
tcagggaaacgacattatgctgatatgattattggtacagaagaagaaaacctgattcac
tttcatgagaaaataagagttgatgaattcaccagcccctatagcacaacggttctccta
tcaattcccaaaggaagcaagctgactgtcaaggctgaacttatttttgaagaatacatt
ggtcttgatatccacaaaaatcttgtactgttgaaggataacaattcagatatgaattac
aaacgtaggcagaagcggccttctctttttcctccacctgcagaaatttgtttaatagaa
gatgacaatgaaaccatatcttatgcttcagctgaaaagctttgcaatttgacgaaatct
aaaacagaaaacagttcaatgcccactttcaaactcatagatgaagaattggaagaaggt
gagcatgctgttgaaataaaaaaggaaagtcataaagtcataactgaacaagcaatattc
gaccacatacgtgaaaaggccaagaacttccctctcttgactcctgcaaaaacttcctct
tctacatcgtcagaggccttgatttccacaagaaagcattcttatgagaaggaccttgat
cttgacaccgagctgattgttatagaagagatagaaggaagcaaaattccacagcagatt
gtcccaaatccaagttcggaaatcagagaagtagaacagaatttgtttaatgtcaacaac
catctgactccaaagcagggctccatgtgtggaagtttgggtaccgtgaacttcttggat
tacaaaggtgggcatccttccgaacctgagaaaagcattctcaaatgtctaacggaagaa
acaatatttggtcacatacgggaaagagccaataattttccagtgttatcaaggactatg
caatctgagtctccaatgtggacaaaggaacaggcaactgagaatcagcccgacttttgc
attgctgcttctaatgcattaatagaaataaagtctgataataagatcatgagagacgtt
gtaatcatttcagatttggaacctggaggggcagtgatgaatgaatgtagttccagggca
ggggcgaaggggaaagaaaataaatctccccgaagtccatatgcagcatatgagagtttg
agcatctctcccaaagttccgagaatcaacaataatccaccttcaatggaaattttatct
tttgatatttccatgataaaggataacactggatcagtgggctcagcaagctccctggag
tataacaggaagcatcagcatcagcattgttctcctaatggatcaaaaaggcaatgctgc
tcaacggcaatggcagacaaaactagggaagtagatacatttcatggatttgaaagtgtt
ttttcatttctctga
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