Manihot esculenta (cassava): 110605606
Help
Entry
110605606 CDS
T05761
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110605606
09124 Replication and repair
03420 Nucleotide excision repair
110605606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110605606
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110605606
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110605606
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110605606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
YOMG_N
MetRS-N
Motif
Other DBs
NCBI-GeneID:
110605606
NCBI-ProteinID:
XP_021599929
LinkDB
All DBs
Position
17:complement(23771831..23777246)
Genome browser
AA seq
451 aa
AA seq
DB search
MPQVRIIAKNFMDMVASLPTMKLDKLYTNPFICQAILRSLPPLAKKYVLEMLYIDGPVSA
KMLEEWVLTDGSSKHRVAVDRLIQLRIFSETVDRKKESSYKLNTTFQINLRKHLTDREVL
PREPMPPNIVARLSSSEELEAYALGQWECFLLQLINSTQAEKPTNFSSSMMKIFQRGLLS
QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERDIDSADLISFLLELSFHITGE
AYNMNTLTEIERHMIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGFVV
VETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL
QQNAHPRVAERIPTVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSRDVFEAACDFAREW
SGLLWEDSKKMRMVVKAEIHMQMREFLRGQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgagaatcattgcgaagaatttcatggacatggtggcgtctctgcccacc
atgaaactcgacaagctctacactaatcccttcatttgccaagccattctcaggtcatta
ccgccattggcgaagaagtatgtgctggaaatgctgtatatagatggtccagtatcggcg
aagatgctcgaggagtgggtgcttactgatggatcctccaagcacagagtcgctgttgat
cgcttgattcagttgagaattttttctgaaacagttgataggaaaaaggaaagcagttac
aaattaaatacaacatttcagattaacctccggaagcatttgacagatcgtgaagttttg
ccgagggaaccaatgcctccgaatattgttgcaagactctcaagctcggaggaacttgag
gcgtatgcccttggacaatgggagtgtttcttgctgcaacttataaactcaacccaagca
gaaaaaccaactaacttcagctcttctatgatgaaaattttccagaggggtcttttgagt
caaagggataaagaagctccgcgattaactgagagtggtttccagtttttgctgatggat
acaaatgctcaattgtggtacatcatcagagaatatatttctaactctgaggaacgtgat
atagattcagcagatctgatttcctttctgctagagctaagttttcatattactggcgag
gcatataatatgaatacattgactgagatcgagaggcatatgataaaggatcttgcagac
ttgggactggttaaacttcagcagggcaggaaagagagttggtttatacctactaaacta
gctaccaatctttcagtgagcttgacagattcatcatctaggaaacagggatttgttgtg
gtggaaacaaactttagaatgtatgcttattcaacatctaagctgcattgtgaaattctg
cgtcttttctcaagggttgagtatcaacttccaaaccttattgttggagcaataacaaaa
gaaagcttgtataatgcttttgaaaatggcatcacagcagagcagataatttcttttctt
cagcagaatgctcaccctcgtgttgcagagagaatacctactgttcctgaaaatgtcaca
gatcagataagactctgggaatcagatctaaacagggttgagatgaccccagcacatttc
tatgatgaattcccctctagggacgtcttcgaggctgcttgtgactttgctcgagagtgg
agtggtttactctgggaggattcgaagaaaatgcgcatggtagtaaaggcagagattcac
atgcaaatgagagagtttcttcgtggacaaaagtag
DBGET
integrated database retrieval system
