Manihot esculenta (cassava): 110605667
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Entry
110605667 CDS
T05761
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-II
KO
K13148
integrator complex subunit 11 [EC:3.1.27.-]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110605667
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
110605667
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
RMMBL
zf-RING_2
Lactamase_B
zf-RING_11
zf-rbx1
Lactamase_B_2
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
Lactamase_B_3
zf-RING_UBOX
zf-RING_5
Anti-Pycsar_Apyc1
Myc_target_1
Motif
Other DBs
NCBI-GeneID:
110605667
NCBI-ProteinID:
XP_043808175
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Position
17:complement(29050616..29068893)
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AA seq
954 aa
AA seq
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MAIECLVLGAGQEVGKSCVVVSINGKRIMFDCGMHMGYDDHRRYPDFSLISTTGDFDSAL
DCVIVTHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEEHF
TSDHIFACMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM
TPDRHLGAAQIDRLQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAAGGKVLIPTFA
LGRAQELCILLDDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKVKETYTTHNAFD
FKNVCNFDRSLIDAPGPCVLFATPGMISGGFSLEVFKHWAPSEMNLVTLPGYCVAGTIGH
KLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKM
ASLRERVQSELGIHCYVPANCDTVSIPSTVFVKAHASDMFIHSCLSPNFGFLNKSSEDTS
NSILDGTSRTSWLQVTDERVTEGILVMEKSKKARVVHQDELLLMLGEKQHEVQMAYCCPV
HVDNLDEARMIHSSAHDVLGLSNKYKNAFSLISLLDINLDKKKKENPFFVXIIFPMSTHN
TAGTTASAAEGDTHSPLLTRQEPPSSTTARPTLLAVLLGRATGRRGPSMLVRETAARELE
ERRADWGYSKPVVALDMLWNTAFVVVSIVMLILTVNEKPNTPVRIWICGYALQCLVHVVL
VWLEYRRRNTRIVRDEERQRETGGGNVDSEDGDGSDRGTLSSSQSSVAKQCESVNTMASF
VWWIVGFYWVVSGGDALLQHAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCI
IAILYAVAGQEGASEADLSVLPKYRFQVMGDEEKPSVGSGKMVPIETSSEYLANERILLP
EDAECCICLCPYEDGVELHTLPCNHHFHSTCIVKWLKMNAICPLCKYNILKGNE
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggccattgaatgcctggtcctcggtgctgggcaggaagtggggaagagctgtgtggta
gtgtccatcaatggcaaacgaataatgttcgattgtgggatgcacatgggctatgatgat
caccgtcggtaccctgatttctctctaatctctacaactggagattttgatagtgccctc
gattgtgttatcgtcacccattttcatttggatcatgttggtgctcttccttacttcact
gaagtttgtggatataacggaccagtttacatgacgtatccaacaaaggcattggctcct
ttgatgttggaggactatcgaaaagtaatggtagacagaaggggggaagaagagcatttt
acttctgatcatatttttgcttgcatgaaaaaagtcattgcagtggacctgaagcagact
gtgcaggttgataaagatcttcagatccgcgcctactatgcgggtcatgttcttggagct
gcaatgttttatgcaaaggtgggagactctgctatggtttacacaggagactataatatg
accccagatagacatcttggagcagctcaaattgaccggctgcaactagatcttctcata
acagaatctacatatgcaacgactattcgcgattcaaaatatgctcgtgaaagggaattt
cttaaagttgttcataaatgtgttgctgctggtggaaaggtccttattcctacttttgca
cttggaagagctcaggaactgtgtatattgttggatgattactgggaacgcatgaatcta
aagatccctatatacttctctgctggtttgacaattcaagctaatatgtactacaaaatg
ctcattgggtggacaagccagaaggtcaaagagacgtatactacacacaatgcatttgat
tttaaaaatgtttgtaattttgaccgctctctaatagatgctcctggaccatgcgttctc
tttgccacgcctgggatgattagtggtggtttttcactagaggtttttaagcattgggct
ccttctgagatgaatctggtaacattgcctggatattgtgtggctggaaccatagggcat
aaattgatgtcgggtaaacccacaaaaattaatttggacaaggatacacaaatcgatgtg
cgatgccagattcatcaattgtctttcagccctcatacagatgccaaaggaattatggat
ctagttaaatttctttctcctaagcatgtgatactagtacacggtgagaagcctaaaatg
gcttctcttagagaaagagtccaatctgaattgggaattcattgttatgttcctgcaaat
tgtgatactgtgagcattccttccaccgtcttcgtgaaagctcatgcctctgacatgttt
atccacagttgtttgagccccaattttggatttttaaacaaaagttcagaagatacatct
aattcaattttagatggcacaagtcgcacatcttggcttcaggtaactgatgaaagagtt
accgaggggatcttggttatggagaaaagcaaaaaggcaagggttgtgcaccaagatgag
ctgctgctcatgttgggagaaaaacagcatgaggttcagatggcttattgttgtcctgta
catgttgacaacttagatgaggctagaatgattcatagctcagcacatgatgtacttggt
ctctctaataaatacaaaaatgctttctctcttataagtctccttgacattaatttagat
aaaaaaaaaaaagaaaatcccttttttgtttaaattatcttcccaatgtcaacgcataac
accgccggtacaaccgcctcggcggcggagggtgacacccactctccacttcttacccgc
caagagcccccttcctccaccacggctcgcccaactttactcgcagttcttctcggacgt
gccactggccgccgtggcccttccatgttagttagagagacggcggctcgtgagctggaa
gagcgacgtgctgactggggttactcgaagcccgtggtggctttggacatgctctggaac
acggcgtttgtggtggtttcgatagtgatgttgattctgaccgtgaacgagaagccgaac
acgccggttaggatttggatttgtgggtacgcgttgcagtgcttggtgcatgtggttttg
gtgtggttggaatataggagaaggaacacgaggatagtgagggatgaagagaggcagcga
gaaactggaggagggaatgttgacagtgaagatggggatgggagtgataggggtactctc
agttctagccaatcaagtgttgctaaacaatgtgaatctgtgaacacaatggcttcattt
gtgtggtggatagttggcttttactgggtagtttctggtggtgatgcccttttgcaacat
gctccgcgtttatactggctggctgtggtttttctggcatttgatgtgttctttgcgatc
ttttgtgttgttttggcatgtttgattggaatcgctctctgttgctgcttaccatgcatc
atagcaatcctttatgctgttgcaggacaggaaggtgcatccgaagcagatcttagtgtc
ctcccaaaatacagatttcaggtgatgggggatgaggaaaagcccagtgttgggtcaggg
aaaatggttcccattgaaaccagcagtgagtacttggcaaatgaacggatactcttacct
gaagatgctgaatgctgcatatgtctctgcccatatgaggatggagtggagctccatacg
cttccttgcaaccatcatttccattcaacatgtattgtgaaatggctgaagatgaatgct
atttgtcctctctgcaagtacaatatcctcaaaggaaatgaataa
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