Manihot esculenta (cassava): 110606161
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Entry
110606161 CDS
T05761
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03410
Base excision repair
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110606161
03410 Base excision repair
110606161
03420 Nucleotide excision repair
110606161
03430 Mismatch repair
110606161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesc03032
]
110606161
03036 Chromosome and associated proteins [BR:
mesc03036
]
110606161
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110606161
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110606161
DNA Replication Termination Factors
ELG1-RFC complex
110606161
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
110606161
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110606161
Check point factors
HRAD17(Rad24)-RFC complex
110606161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
Rad17
DNA_pol3_delta2
RCF1-5-like_lid
AAA_lid_RFC1
AAA_assoc_2
AAA_16
AAA_11
AAA_22
DNAX_ATPase_lid
ATPase_2
DUF815
AAA_5
AAA_7
RuvB_N
AAA_30
nSTAND_NTPase5
ResIII
AAA_3
AAA_14
bpMoxR
AAA_19
AAA_24
nSTAND3
AAA_18
NMDAR2_C
TIP49
AAA_28
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110606161
NCBI-ProteinID:
XP_043809003
LinkDB
All DBs
Position
18:7289374..7293471
Genome browser
AA seq
436 aa
AA seq
DB search
MELLKAHTQFGTCLKISLAPSAKPPTRCAQCSCCFSNLSRGILNLNSPARQIARVCEKMT
EVVSLMDIDEDENQNRNQNHSLKSNKGKNVVVAGTTPDAKATPWVEKYRPQSLADVAAHR
DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGID
VVRQQIQDFASTQSFSFGTKSFVKLVLLDESDAMTKDAQFALRRVIEKYTKNTRFALICN
HVNKIIPALQSRCTRFRFAPLDPIHVTERLKHVIEAEGLDVPESGLQALVRLSNGDMRKA
LNILQSTHMASQQITEEAVYLCTGNPLPRDVEQISYWLLNESFAESFKRISEIKMRKGLA
LVDIVREVTMFVFKIKMPSDVRIHLINDMADIEYRLSFGCNDKLQLGSLIASFTRARSAL
VAAAVILQLMDEFAFR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaactactaaaagcccacacccagttcggcacctgcctcaaaatcagcttggcgcca
tcagcgaaacctcctacccgctgtgctcagtgctcttgctgcttctcaaatctcagtcga
gggatcctgaacttgaattctccggctagacagatagcgagagtgtgtgaaaagatgaca
gaggtggtatctcttatggacattgacgaagatgagaaccagaaccgtaatcaaaaccat
tccttgaaatcaaacaagggcaaaaacgtcgtcgttgctggcactacgcctgatgctaaa
gccactccctgggtggagaagtatcgccctcagtcactcgccgacgtagctgctcatcgc
gacattgttgataccattgataggcttaccagtgaaaacagattgccccacctcctactg
tatggccctcctggcactggaaaaacatcaactattcttgctgttgcacgtaaactgtat
ggggcacagtaccataatatgatcttggagctgaatgcatcagatgacaggggaattgat
gtagtgcgacagcagatacaagattttgctagcactcagagcttctcatttgggacaaag
tcatttgtaaagttggtcttactagatgagtcagatgccatgactaaagatgcccaattt
gccctgcgtagagtgattgagaaatacaccaagaacactcggtttgcactcatctgcaat
catgtgaacaaaattattccggcactgcaatctagatgtactcgatttcgatttgctcct
ctcgatcctatacatgttactgaacgacttaaacatgttatagaggctgaagggcttgat
gtacctgaaagtggcttgcaagcacttgtacgacttagcaatggtgatatgaggaaggcc
ttgaacatattacagtcaacacacatggcttctcagcaaattacagaagaagctgtatac
ctttgcactggaaatccattgcccagagacgttgagcaaatatcttactggcttctaaat
gaatcatttgcagaaagtttcaaacgaatttctgaaatcaagatgaggaaaggattagca
ttggtggatattgtgagagaagtgactatgtttgttttcaagattaagatgccatcagat
gtcagaattcatttgatcaatgacatggctgatatagagtacaggttgagttttgggtgc
aatgataagttgcaattggggtcacttattgcttctttcacgcgggctcgatctgctctg
gttgctgctgctgtaattcttcagcttatggacgaattcgcatttcgctag
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