Manihot esculenta (cassava): 110606163
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Entry
110606163 CDS
T05761
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110606163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110606163
03036 Chromosome and associated proteins [BR:
mesc03036
]
110606163
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110606163
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110606163
PBAF complex
110606163
GBAF(ncBAF) complex
110606163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF1803
Motif
Other DBs
NCBI-GeneID:
110606163
NCBI-ProteinID:
XP_043808893
LinkDB
All DBs
Position
18:7325875..7332855
Genome browser
AA seq
774 aa
AA seq
DB search
MPASPSFPSDGRGKWKRRKREPQITPKQHPKYQHRDPHDDDDDDAIEEDNDNRHHHLDGD
SEDHLNPDLTQSAVLPDSSHIETEVFADGGVRICDFPSVTKLVVNRPHESVLAVVALESA
NLIGVSSGNGRSQVPNLENVSYGQLQAVSAVPAEGLGSDQERNDGGNSAYVVTPPPVMEG
KGVVKRYGTRVHVVPMHSDWFSPATVNQLERQVVPHFFSGKSPDYTPEKYMECRNYIVAK
YMGNPEKRICVSDCQGLVFGIENEDLAQIVRFLDHWGIINYCAAPSSHETWNGESYLRED
QNGEVHVPSAALKSIDSLIKFDKPQCRIKAADIYSPLSCHDDDFSDLDNRIRERISENCC
TYCCQPLPGMYYQSQKEIDILLCSDCFHDGRFVINHSSLDFIKMDPTKDYSDFNGESWSD
QETLLLLEAMEIYNENWNEIAEHVGSKSKSQCILHFVRLPMEDDLLENIEVRSMSKLPHP
SSRDDHGRLHSRSNGSCHQDADAESRIPFVNSGNAVMSLVAFLASAVGPRIAAACARASL
AALFEDNRVSSERLHGREGNFYGEVANSIQQKEKVEAAVEAGLAGAATKAKLFADHDERE
IQRLSANIINHQLIWRQLKRLELKLKHFAEVETFLMRECEQVEKTRLRFVAERARFLAMR
NGPPMSASQMNIAGVSPSMVNNNVGSNRQQVMPTASSQPSVSGYGNNQQAHPRMPFMQLG
QPQPMLPLGPRQPLTAMQPSSSIPSNAMFNASGNSQSSLNQMLRSVSGPSSGLC
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccctctttcccttcagatggcagaggcaaatggaagaggcgaaagcgg
gagccccaaatcactcccaaacaacaccccaaataccaacaccgcgaccctcatgatgac
gacgacgacgacgccattgaggaagacaacgacaaccgccaccaccatctcgacggtgat
tctgaggaccacctcaatcccgacctcacccagtctgctgttcttcctgattccagccat
attgaaaccgaggtgttcgctgatggtggggtccgcatatgtgacttcccttccgttacg
aagcttgtggtgaatcggccccatgagtcggttttggctgtagtggccttagagagcgcg
aatttgattggggtcagtagtggtaacggtaggagtcaggtgcccaatttggagaacgtt
tcgtacgggcaactgcaggctgtttctgctgtgcctgctgagggtttggggtctgatcag
gagaggaatgacggtggaaattctgcttatgtggtgacgccgcctccagttatggaggga
aaaggtgttgtaaaacgttatgggactagagttcatgtggttccaatgcattcagattgg
ttttcaccggctacagtgaatcagttggaaagacaagtggtgcctcattttttctctgga
aaatcaccagattatacaccagagaagtacatggaatgtcggaattatattgttgctaaa
tacatggggaatccagagaagagaatctgtgtttctgattgtcaaggattggtttttgga
attgagaatgaagatttggctcaaattgttaggtttcttgatcattggggaattatcaat
tactgtgcagccccatcaagtcatgaaacctggaatggtgagtcctacttaagagaggat
caaaatggcgaggttcatgtgccatcagctgctttaaagtcaattgatagtttgataaaa
tttgacaagcctcaatgtaggatcaaggcagctgatatttattcaccattgtcatgtcat
gatgatgatttctctgacttggataacagaattcgagagcgcatttctgaaaattgttgc
acttattgttgtcagcctcttcctggcatgtattatcagtcacagaaagagattgatata
cttctatgctctgactgcttccatgatgggaggtttgtgatcaatcattcaagcttggat
tttataaagatggatccaacaaaggattatagtgatttcaatggagaaagttggagtgat
caagaaacactgttgttgcttgaggcaatggaaatttacaatgagaattggaatgaaatt
gcagaacatgttggatcaaagtcaaaatcacaatgcattcttcattttgttcgtttaccc
atggaggatgacctgttggaaaatattgaagtccgaagtatgtccaagttacctcatcca
tcaagtagagatgatcatggaagactacattcacggtcaaatggatcctgccaccaagat
gctgatgctgaaagcagaatcccctttgtgaactctgggaatgcagtgatgtcattggtt
gcctttctggcgtctgctgttggaccaagaattgcagcagcatgtgcccgtgcatccttg
gcagcattgttcgaggacaatagggtgagttcagagagattacatggtagagaaggcaat
ttttatggagaagttgcaaattcaattcaacaaaaggaaaaagtggaagctgctgtggaa
gctggtcttgctggtgctgcaactaaagctaaactgtttgcagatcatgatgaaagggaa
attcaaaggctatctgctaatatcattaaccaccagttgatatggagacagttgaagaga
ttggagctgaagttgaagcactttgccgaagtggaaacttttctaatgagagagtgtgaa
caagtggagaagactaggctaaggtttgttgctgagcgcgcccgctttctagcaatgcgg
aatggacctcctatgtctgcttcacaaatgaacatagcaggtgtttctccttccatggtt
aacaacaacgttggcagcaataggcaacaagtaatgcctaccgcttcttcgcagccaagt
gtttcaggatatggcaacaatcaacaagctcatccccgcatgccatttatgcaactggga
caaccacaaccaatgttgccattagggcctaggcagcccttaacagccatgcagccatcc
tcatctattccatcaaatgccatgttcaatgcctccggaaattcccagtccagtctcaat
caaatgctgaggtctgtgtcggggccgagctctggtctatgttga
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