Manihot esculenta (cassava): 110606569
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Entry
110606569 CDS
T05761
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110606569
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110606569
Membrane trafficking [BR:
mesc04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
110606569
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110606569
Exosomal proteins of bladder cancer cells
110606569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
WD40_Gbeta
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Zn_ribbon_19
BPS1
Motif
Other DBs
NCBI-GeneID:
110606569
NCBI-ProteinID:
XP_021601126
LinkDB
All DBs
Position
18:1839985..1845547
Genome browser
AA seq
1217 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSRRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
GSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHDEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALKKKSVAPADENLR
FSQVNSDFFGGVDVVVKYVLEGHDRGVNWASFHPNLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDAIVSNSEDRSIRVWDATKRTGLQTFRREHDRFWILAAHP
VMNLLAAGHDSGMIVFKLERERPAFSVSGNTMYYVKDRFLRFYEFPSQKEAQVMPIRRPG
SSSLNQGARTLSYSPTENAVLICSDLDGGSHELYIIPKGSSGRGETVQEAKRGVGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKRTALPLLADAIFYAGTGNLLCRAEDRVFIFDIQ
QRLIFGELQTPFVRYVVWSNDMESVALLSKHSIIIADKKLVHQCSLHETIRIKSGAWDDN
GVFIYTTLNHMKYCLPNGDNGIIKTLDVPLYITKVAGNTVYFLDRDAKSCAIVIDATEYI
FKLSLLRKRYDQVMSMIRSSELCGEAVIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSK
MLKIAEVKDNVMGQFHNALYLGDIRERVKILENAGHLPLAYTTAATHGLHDIAERLAAEL
GDDVPSLPEGKSPSLLMPPSPILCGGDWPLLRVMRGIFGGGLDNADKHVQEEYEDAADAG
WGDDSDIVDVENMPNGDTSIVLEGGDEHEEYEEGGWDLEDLDLPPENDTLKTANNSRSSV
FVAPTPGMPVNQIWIQKSSLAAEHAAAGNFDTAMRLLSRQLGIRNFAPLRPLFLDLQMGS
HSYLRAFSSAPVIQLAIERGWNESASPNVRHPPALVFDFSQLEEKLKAGYKATTAGKFTE
ALRHFLSILHTIPLIVVETRREVDEVKELVVIVKEYVLGLQMELKRRDIKGNPVHQQELA
AYFTHCNLQLPHMRLALLNAMTVCYKAGNLNTAANFARRLLETNPTIESQAKTARQVLQA
AEKNMTDKSQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCTVCDLA
IVGSDASGLLCSPSQIR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaaatttgagacgaaaagtaatagagttaagggactgagctttcacagcagg
agaccatggatcttggccagtctacatagtggtgtaatccagctttgggattacaggatg
gggactctcattgatcgatttgatgagcatgatggacccgtccgtggcgttcattttcac
gggtctcagccgctttttgtctcaggaggggatgattacaagatcaaggtatggaattac
aagttgcataggtgtctgtttacccttcttgggcaccttgattatatccgtactgttcag
ttccatgatgaatatccatggattgttagtgctagcgatgaccagactattagaatttgg
aattggcaatcacgaacttgcatttcagtattaacaggacacaaccattatgtcatgtgt
gcctccttccatcctaaggaagatctggttgtgtcggcatccttggatcaaactgtccgt
gtatgggatattggtgccttgaagaagaaatcagttgcccctgcagatgagaacctacgg
tttagtcaggtgaactcagatttttttggtggagttgatgttgtcgttaagtatgttcta
gagggtcatgaccgtggcgttaactgggcttcattccatcccaatctacctcttattgtc
tcaggagctgatgatcggcaagtgaaaatttggcggatgaatgatacaaaagcatgggag
gtggacactttgagggggcacatgaataatgtgtcctgtgttctgtttcatgcaagacag
gatgctattgtttccaattcagaggataggagcattcgtgtgtgggatgccacaaagcgg
actggtcttcagacatttcgaagggagcatgaccggttctggattcttgcagcacatcct
gtgatgaatcttttggctgctgggcatgatagtggcatgattgttttcaaattagagaga
gagcgccctgctttctctgtgagtggcaatacaatgtattatgtcaaagatcgttttctg
cgattttatgagttcccaagtcaaaaggaagctcaggtgatgccaattcgaagacctggt
tcttccagcttgaatcaaggagcaagaacgctttcttatagccctacagaaaatgctgtt
ttgatttgttcagatttggatggaggatctcatgaactttacattatacctaaaggcagc
agcggcaggggtgagactgttcaggaggcaaaaagaggtgttggagggtcagcagttttt
gtggctagaaataggtttgctgtgctggaaaagagcagcaaccaagtgttggtgaagaac
cttaaaaatgagattgtcaagagaactgccctacctcttcttgctgatgcaatattttat
gctggaacaggaaacttgttgtgcagagcagaggatagagtctttatttttgatatccag
cagaggcttatttttggggagctccaaactccttttgttaggtatgttgtttggtcaaat
gacatggagagtgtggcacttctgagcaaacattcaattataatcgccgacaagaagctt
gtgcatcaatgttctcttcatgagacgatccgaataaagagtggagcttgggatgacaat
ggtgttttcatatatacgaccctgaaccacatgaagtactgccttcctaatggtgacaat
gggatcatcaagactcttgatgtcccactgtacatcacaaaagtggctggaaacaccgtt
tatttcctggaccgagacgcaaaaagctgtgctattgtcattgatgcgactgaatatatt
ttcaaattatctctcctgaggaagagatatgaccaagttatgagcatgattagaagctca
gagctctgtggggaggcagtgattgcatatttgcagcagaaaggtttcccagaagttgcc
cttcattttgtgaaagatgagcggacacgttttaatttggcattagagagtggcaatatc
cagattgcggtggcttctgctaaggaaattgatgaaaaagatcactggtataggttgggg
gtggaggctcttcgtcagggtaatgcaggcattgtagaatatgcataccagagaaccaag
aattttgagaggctgtcattcctttatcttataactggaaacatggataagttgtccaaa
atgctaaaaatcgctgaagtaaaggataatgtgatgggtcagttccataacgctctttat
ttgggtgacattagggaacgtgtaaagatattggagaatgctggacatctcccccttgca
tacaccacagctgctacccacgggctccatgatattgctgaacgtcttgctgcagaacta
ggggatgatgtcccctccttgcccgaggggaaatcaccatctcttttgatgcctccaagt
ccaattttatgtggtggagattggcccttgctgagggtcatgagaggaatttttgggggt
ggtcttgataatgcagacaaacatgtgcaggaagagtatgaagatgctgcggatgctggt
tggggtgatgattcggatattgttgatgttgaaaatatgcccaatggagataccagcata
gtactggagggtggagacgagcatgaagaatatgaggagggaggatgggatcttgaggat
cttgatcttccacctgagaatgatactctgaaaactgcaaacaactctcgttcttctgta
tttgttgccccaactcctggtatgcctgttaatcaaatttggatccagaagtcatctctg
gctgctgagcatgctgcagctggcaattttgatacggcaatgcgcttgttgagccggcag
cttggaataaggaactttgctccattgagaccattattccttgacttgcagatgggcagc
catagttatctccgtgctttctcttcggcccctgtgattcagcttgcaattgagagagga
tggaatgaatctgccagccctaatgtgaggcatccaccagctcttgtgttcgatttctcc
cagctggaagagaagcttaaggcaggctacaaagccacaactgcaggaaaatttacagag
gctttacggcatttcctcagtatacttcataccattcctctgattgttgttgagacaagg
agggaggttgatgaagtgaaggaactagttgtgattgtaaaggagtatgttctaggtctg
cagatggagctcaagaggagggatattaaaggcaatccagttcaccagcaggagctagct
gcgtacttcactcactgtaaccttcaactaccacacatgagacttgcattattgaatgca
atgacggtttgttataaagctggcaatctcaacacagctgctaactttgctaggcgactg
ctggaaaccaatcctaccattgaaagtcaagctaaaactgcacgccaagtcttgcaagct
gctgagaagaatatgacagacaaatcccagcttaattatgattttagaaatccatttgta
gtttgtggggcaacttatgtgcctatatacaggggacaaaaggatgtatcatgcccatac
tgcagttcacgttttgttccatcccaggaagggcaactttgtactgtttgtgatcttgct
atagttggatcagatgcatctgggttgctttgttctccttcccagataagataa
DBGET
integrated database retrieval system
