Manihot esculenta (cassava): 110606678
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Entry
110606678 CDS
T05761
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110606678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110606678
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110606678
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GFIT
Motif
Pfam:
LRR_6
DUF7885
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
110606678
NCBI-ProteinID:
XP_021601291
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Position
18:7880811..7885314
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AA seq
379 aa
AA seq
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MVGEAKLRSEDLNQCFERLMMVGGGNSAIAGGISHGGVKLEGVVITEWKDIPMELLLRIV
SLVDDRTIIMASGVCSGWRDAICLGLTHLCLSWCKNNMNNLLLSLAPKFTKLETLVLRQD
KQQLEDNAVEAIASYCHDLQDLDLSKSSKLSDRSLYALAHGCPNLTKLNISGCTAFTDGA
LEYLTRFCRKLKSLNLCGCVNAATDRALQAIGQKCSELQSLNLGWCENVGDLGVMSLAYG
CPDLRTLDLCGCVYITDDSVIALAYRCLHLRSLGLYYCRNITDRAIYSLVHSRVKNKPPL
WQTMKGRSDEEGLRSLNISQCTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLSLTSVH
CACAVQAHRTMSYIPNQAH
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtgaagctaaattgaggagtgaggacttgaaccagtgttttgagaggctgatg
atggttggcggtgggaatagtgcgattgctggtggaattagtcacggaggagtgaaattg
gagggagtggtcatcactgagtggaaagatatccctatggagcttttgctgcggattgtt
tctcttgttgatgatcggaccattattatggcttctggggtttgtagtggttggagggac
gctatctgtttgggcctaacccatctctgtctctcttggtgcaaaaacaacatgaacaac
ttgcttctatctctggctcctaaattcacaaaactggaaactctagtactgcgacaagat
aaacaacaacttgaggataatgctgttgaggctattgcaagctactgtcatgatttgcaa
gatctagatctcagcaaaagttctaagcttagtgatcgttctctatatgcattagctcac
ggttgtcccaaccttactaaactcaatatcagtgggtgtacagcatttacagatggtgct
cttgaatatctgactcgattttgccgaaaattaaaatctttgaatctttgtggatgtgta
aatgctgcaactgaccgtgctttgcaggctattggacaaaaatgcagtgagttgcaatct
ctgaatctgggatggtgtgagaatgtgggtgatcttggagtaatgagcttagcatacgga
tgtcctgatctcagaactcttgatttatgtggatgtgtctatataacagacgatagcgtg
attgctttggcatacagatgtctccatttgagatcccttggtctgtactactgtcgaaac
atcacagatagagccatctattcactggtgcatagccgagtgaagaacaaacccccactg
tggcaaaccatgaagggcaggagcgatgaggaaggtttaaggagtctcaacatcagtcaa
tgcacagcactcacccctcccgccgttcaagcactttgcgactcatttcctgcacttcac
acctgctcaggtaggcattctcttgtcatgagtggctgtttaagcttgacatcggtgcac
tgtgcctgtgcagtccaagcacaccgcacaatgagttatattcctaatcaagctcattaa
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