Manihot esculenta (cassava): 110606979
Help
Entry
110606979 CDS
T05761
Name
(RefSeq) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mesc03016
]
110606979
Enzymes [BR:
mesc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
110606979
Transfer RNA biogenesis [BR:
mesc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
110606979
Prokaryotic type
110606979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
110606979
NCBI-ProteinID:
XP_021601706
LinkDB
All DBs
Position
18:1121443..1123458
Genome browser
AA seq
548 aa
AA seq
DB search
MENPDSKSTKSPPPQQEPELKKPKMSTTTSDDEETVTTAPGDTTTIKKQRYKRRKIAIFF
AYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGNSKRYDWARSARTDKGVSAVG
QVVSGRFYIDPPGLVERLNSNLSSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDP
CSHPDRESVLASLGSDNELVKCFECSERGRKVVGAVGKRSFESKSVVSQTDISLNDGDYA
VKPEVIEDIRMPADNADCDNTNAELVKEAEVPRNEDTETRPAIPESAILSNDVDANNEPD
GKEEIMESVEHTSDADTKPETIERDQKVVISEEKVNGGKQVTIGSEFCYGEKEKERFNRI
LKYYVGSHNFHNFTTRTKAEDPSARRYIISFDAKTTVTVDGIEFVKCEVVGQSFMLHQIR
KMIGLAVAIVRNCAPESLISTALQKDVSINVPTAPEVGLYLDECLFASYNQKWKDSHEEL
SMKDYEEVAEDFKMKHIYSHVASTEHKEGAVALWLHSLNHRNYPDLRVSNCADTNAEKSA
EVNLAKEM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatccagattcaaaatccaccaaatccccaccaccgcaacaagaaccagagctt
aaaaagcctaaaatgtccaccaccacttccgacgatgaagaaactgtcacgacagcaccc
ggcgataccacgacgatcaaaaagcaaagatacaagcgccgcaaaattgcgattttcttc
gcgtactgcggcgtgggctaccagggaatgcagaagaatccaggggccaaaactatcgaa
ggtgacctcgaagaagctctatttcactctggtgccgtcccagaacaggaccgtggcaac
tccaagcggtatgactgggctcgctcggctcgtactgataagggcgtgagtgccgtggga
caggtggtctccggacgcttctacatcgacccacctgggctggttgaacgcttaaattcg
aatctttcgtcgcagattaggatcttcgggtacaagcgagtgacggcgtcgtttaatgcc
aagaagttttgtgatcgtagaaggtatgtctatctgattcctgtttttgctcttgatcca
tgttcgcatcctgatagggagagcgtattggctagtttggggtctgataacgagcttgtt
aagtgtttcgagtgttcagagagagggcgtaaggtagttggcgcggtgggtaaacggagt
tttgaatcaaaatccgtggtttctcaaacagacatttcactgaatgatggtgattatgct
gtgaaacctgaagttattgaggatattaggatgcctgcggataatgctgattgtgataat
acaaatgctgaactcgttaaggaagctgaggtccctcgaaatgaggatactgaaacacga
cctgcaatacctgaatctgccattttgtctaacgatgtagatgctaataatgagcctgat
ggtaaagaggagattatggagtctgtggaacataccagtgatgcggatacaaaaccagaa
accatagagagagatcagaaggttgttatcagtgaagagaaagttaatggaggcaagcaa
gttactataggaagtgagttttgttatggagagaaggaaaaggagagattcaatcgaata
ttgaagtattacgtggggagtcacaattttcataattttacaacaagaaccaaggctgaa
gatccttctgccaggcggtacattatttcctttgatgcaaagaccacagttactgttgat
ggcattgaattcgtcaagtgtgaagttgtagggcagagtttcatgcttcatcagattagg
aaaatgattggtcttgctgtggcaattgtgaggaattgtgcccccgagtcattgatatca
actgcattacaaaaggatgtgagcattaatgtgcctacagctcctgaggttgggttatac
ttggatgagtgcctcttcgcgtcctataaccagaaatggaaagacagccatgaagaactc
tcaatgaaagattatgaagaagtggcagaggacttcaagatgaagcatatatactctcat
gttgcgtcaacagaacacaaggaaggagcggtggccctatggttgcattctctgaaccac
agaaactatcccgatctgcgtgttagcaattgtgcagataccaatgctgagaaaagtgct
gaagtgaacttggcgaaggaaatgtag
DBGET
integrated database retrieval system
