Manihot esculenta (cassava): 110607075
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Entry
110607075 CDS
T05761
Name
(RefSeq) RNA-binding protein 1
KO
K14411
RNA-binding protein Musashi
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110607075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110607075
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110607075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Nup35_RRM
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
110607075
NCBI-ProteinID:
XP_021601824
LinkDB
All DBs
Position
18:4286944..4289032
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AA seq
416 aa
AA seq
DB search
MEEGACVLLLLEEVVSFELDSPKKPTQNSLRLGFLLTGFMMDNDKAKLFVGGISRDTSED
ALKAHFAKYGTVLTSVVAKDKYTRSPRGFGFVTFSDPTCADKALQDSHVILGRTVEVKKA
IPKSEQLQLQQLQQQQFPNQQKSSGFSENGSNSNGNDCLRTKKIFVGGLSSSLTEEQFHN
YFQRFGKIVDVVVMQDPLTNRPRGFGFVTYDSEESVEKVMLNNFHDLYGRLVEVKRAVPK
EGISGSNNNRVAKGGVRWFSAKSSQPGNYVSYGPGYEVLSGHVPIHWYSGVGGCFYGTGF
YGGYPAVGCSRSDFGFTPVGPRSPWNGPVLIAATMYPPPYSSAFLYPAYTNGVVGLMGMT
VSEYSGIDGHNGNGKLNGDHGGNEQLPPSATVSPIEGVESGVDSSGLNGSDGGASS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggtgcctgcgtccttctacttctagaagaagtggtatcctttgaattggat
tctcctaagaagcccacgcagaattctctgcgattagggtttttgctgacgggattcatg
atggataacgataaagccaagttatttgttggaggtatatctcgggacaccagtgaagat
gctctcaaagctcactttgctaagtatggtactgttttaacttctgttgttgccaaggac
aagtacaccagaagccctagaggctttggctttgtaactttctctgatcctacctgcgct
gataaagcccttcaagattctcatgtaatactaggaagaacggtagaagtgaagaaagct
atacccaaaagtgaacagttgcaattacaacagcttcagcagcaacaattccccaatcaa
caaaagagtagtgggttcagcgagaatggtagcaatagtaatgggaatgattgccttagg
actaaaaagatctttgtagggggtctttcatctagtctaactgaggaacagtttcataat
tactttcagagatttggtaagatagtagatgtagttgtgatgcaagaccccttaaccaac
aggccaaggggctttgggtttgtcacttatgattctgaagaatctgttgagaaggtaatg
ttgaataattttcatgatttatatggtaggcttgtggaggttaagagggctgtgccaaag
gaaggtattagtggtagcaacaataaccgtgttgcaaaaggaggtgtgagatggttttct
gctaagtcttctcaacctggaaattatgtttcttatggtcctggatatgaagttctttca
ggccatgttcctattcattggtatagtggtgttggagggtgtttttacggaacaggcttc
tatggtggttaccctgcggtaggatgtagcagatctgactttggatttacaccagttggc
ccaaggagcccttggaatggtcctgtgttgattgctgccacgatgtatcctccaccatat
agcagtgcttttctttatccagcttacacaaatggtgttgttggccttatgggtatgact
gtgagtgagtacagtgggattgatggacataatgggaatgggaaactgaatggggatcat
ggtggcaatgaacaactgccacctagtgctacagtgtctccgattgaaggcgtagagtca
ggagttgattcttcaggtctgaatggtagtgatggtggtgcatctagctaa
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