Manihot esculenta (cassava): 110607329
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Entry
110607329 CDS
T05761
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110607329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110607329
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110607329
Complex C
U4/U6.U5 tri-SnRNP related factors
110607329
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
110607329
NCBI-ProteinID:
XP_021602108
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Position
13:complement(266011..269510)
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AA seq
378 aa
AA seq
DB search
MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL
EPLYNDYRKLRQKLADGKFALTHVDEVIDELLTKDYSCDIALPRVKKRRTLESLGSLEPR
KSVLEDDFEEEEEKEENEQIDGLDNGADERDYYHGRSPTRERDRDRRRESHRYRDRDYDR
DYDRDYDRERGRGRERDRDRERDRDRERERDRDRDRYRLREEKDYGRDREREREREGRER
ERRDRDRGRRSHSRSRSRSRDRKRHGRSCSPKRRGDGPEEPKKKKEKKEKKDDGTDHPDP
EIAEANKLRAALGLKPLK
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccgcacagatcctgcggccaagagtataaggggcactaacccccagaacttg
gtggagaagattcttaggtctaagatttaccagaacacctactggaaggagcaatgcttc
gggttaacggcggagacgcttgtggacaaggctatggagctcgatcatctcggtggtact
tacggtggcaaccgcaaacctacgccttttatgtgcttagtcatgaagatgctccaaatc
cagcccgaaaaggatatcgtcgtcgagttcataaagaacgacgattacaaatatgtgcga
atacttggtgctttttatctgcgccttactgggactgatgttgatgtgtaccgataccta
gaacctttatacaatgactatcgaaaattaaggcaaaagttagctgatggaaaatttgcc
ttaacacatgtggatgaggttatagatgagcttctgacaaaagattattcctgtgatatt
gctctgcctcgtgtcaagaaaagaaggacacttgaatcacttggctcacttgagcctaga
aaaagtgtgttggaagatgattttgaagaggaggaagagaaagaggaaaatgaacaaatt
gatgggctagacaatggggctgatgaaagagattattaccatgggagaagtcccacaagg
gaaagagatagagataggagacgcgagagtcacagatacagggatcgagactatgatcgg
gactatgacagggactacgatagagaacgtggacgggggcgtgagagagatagggataga
gaacgggatagggacagagaaagagagagggatagggatcgggatcgctatcgtttaaga
gaagaaaaggattatggtcgtgatagggaacgagaaagagagagggaaggcagagaacgg
gagaggcgagatagggaccgtggcaggcggagtcattcaaggagtagaagtaggagtagg
gatcgcaagagacatggccgcagctgcagtccaaaaaggcgtggagatggtccggaagag
ccaaagaagaaaaaggaaaagaaggaaaagaaggatgatggcaccgaccacccagatcca
gagattgcagaagctaataagctccgagcagccttgggtttgaaaccattgaagtga
DBGET
integrated database retrieval system
