Manihot esculenta (cassava): 110607726
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Entry
110607726 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110607726
03015 mRNA surveillance pathway
110607726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110607726
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110607726
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110607726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
110607726
NCBI-ProteinID:
XP_021602572
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All DBs
Position
9:complement(10321934..10326494)
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AA seq
548 aa
AA seq
DB search
MADATEPTASADTESKTPASVVESTELENKPQTAEITSTSMVDAAEPTASVETESKPPAS
AAESTEPENKSQTVEIKRWADVVDDEEQPSGTASSSEDKIAEELKVDKLTIDDAQKINKF
LDDPEDSRIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT
PPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNVKRPQALCICPTRELSIQNLEVLQKMGKY
TGISSECAVPMESGNSDRSRSRPPIFAQVVIGTPGTIKRLMSQKKLSVIDMKVLVFDEAD
HMLAKDGFQDDSLRIMKDIERLNARCQILLFSATFDETVKNFVSRIVKKDHNQLFVKKEE
LSLDSVKQYKVYCPDEMVKILVIKDRILELGENLGQTIIFVNTKRSAGMLHKALVDLGYE
VTTIHGALTHEDRDKIVKEFKDGLTQVLISTDLLARGFDQQQVNLVINYDLPVKYETPSE
PHYEVYLHRIGRAGRFGRKGAVFNFVMSERDAMIMEKIDKYFGTQVKAVPSWNSEEDFKI
ALKEAGLL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctacggaacccaccgccagtgcggatacggagagcaaaacgcctgcctct
gtcgtcgagagtacagagctagaaaacaagccacaaacggcggaaattaccagtacttca
atggtggatgctgcagaacccaccgccagtgtggagacggagagcaaaccacctgcctct
gccgccgagagtacagagccagaaaacaagtcacaaacggtggaaataaagcgatgggct
gatgtagtagacgatgaggagcaaccgagcggcactgcctcctcatccgaggataaaatc
gctgaggaactcaaagtggataaattaactattgatgatgcccaaaaaatcaacaaattc
ctcgatgaccccgaagattctaggatccaagctgttacatctggtgataccccgtatact
tcagcaagtacatttgaagatttgaacctgtcacctgagctgctgaagggattgtatgtg
gagatgaaattccagaaacctagcaaaatccaagctataagtcttccgatgattttgact
cctccatacaaagatttgattgctcaggcacataatggttctggtaagaccacttgtttt
gtgcttggcatgttgagtcgcgtcgatccaaatgtgaaaagacctcaggcactctgcatt
tgtcctacaagagagttatccattcagaatttggaggttcttcaaaagatgggaaaatac
actggaatcagttcagaatgtgcggtgccaatggagagtggaaacagtgataggtctaga
agtcggccaccaatatttgctcaagtagttattggcacccctggtacaataaagagatta
atgtcgcagaagaaattaagtgttattgatatgaaagttcttgtttttgatgaggctgat
cacatgcttgccaaggatggttttcaagatgattccttgaggataatgaaggatattgaa
agactcaatgctcgctgccagattcttctgttttctgcaacatttgatgagactgtcaag
aattttgtatcaaggattgtgaagaaagatcacaatcaactctttgtgaagaaagaagaa
ctatcattagattctgtaaagcagtacaaggtatactgtcctgatgagatggtcaaaatt
ctagtaattaaagacagaatccttgaactgggagagaacctgggacagacgattatattt
gtgaacacaaaacggagtgcgggaatgctgcacaaggcacttgtggacttgggttatgaa
gtgaccaccattcatggtgcactcactcatgaagatagagacaaaatagtcaaagagttc
aaagatgggttgactcaagttctgatatcaactgatcttttagcccgaggctttgatcaa
cagcaggttaatttggttatcaattatgatcttccagtgaagtacgagactccatcagag
cctcattatgaggtgtacctgcataggattggtagagcagggcgttttggccgcaaagga
gctgtcttcaactttgtgatgagtgagagggacgcgatgatcatggaaaaaattgacaag
tattttggcacccaagtaaaagcggtgccatcctggaacagtgaggaggattttaagata
gccctgaaagaagctggattgctgtaa
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