Manihot esculenta (cassava): 110608293
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Entry
110608293 CDS
T05761
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110608293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110608293
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110608293
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110608293
NCBI-ProteinID:
XP_021603205
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Position
3:complement(26355539..26359762)
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AA seq
479 aa
AA seq
DB search
MESDLGKLFVGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA
ERVIIDKHMIDGRTVEAKKAVPRDDQHILNRSTSSVHGSPGPGRTKKIFVGGLASTVTDS
DFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDTVDRVLHKTFHELNGKMVEVKR
AVPKELSPGPSRSPLIGYNYGLSRTNNFLNAYAQGYNMNSIGGFGMRMDSRFSPLASGRS
GFPPFGTTGYGMGMNLEPGLSPSYGGGSNFGNNPAYGRMLNPYYSGNSTRYSTPIGYGVG
NARNDSVISPTTRNVWGNGGLNTAANPASPGAFLGSGNGNFGVSFGNSGASWGPSHVSAQ
GAGSASGYTSGSMGYGSGGDSSYGLGGGGYGRTSGAVAAPTSSFAGSTGVYEGSYGDLYR
SGSVYGDSTWRSGTPELDGAGSFGYGLGNIGSDVTAKNSEGYIGSYGVTSRQANRGIAT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagatcttggtaagctcttcgttggtgggatttcttgggacacggatgaggaa
cgtctcaaggaatactttagcaagtatggggaagtggtggaggcggtgatcatgagagat
agaacaacgggccgtgctcgtggctttggtttcgtggtcttcgcggatcctgccgtcgcg
gagagggtcattattgataagcacatgattgatggacgcacggttgaagctaagaaggct
gttccgagggatgatcaacacattttgaatagaagtactagtagtgttcatggttctcct
ggacctggacgcaccaagaagatttttgttggaggtctggcttctactgtaacagacagt
gacttcaagaagtactttgagcagtttggcaatatcactgatgttgttgtgatgtatgat
cacaacacgcagaggccaagaggctttggcttcatcacttatgattcagaggacactgtg
gatagagttctgcataaaacatttcatgaacttaatggtaaaatggttgaggtcaagaga
gcagtccctaaggagctatccccagggcctagtcgaagccctttgataggatataactat
ggtttaagtaggaccaacaacttccttaatgcatatgctcagggatacaatatgaactca
attggaggttttggaatgaggatggatagtaggtttagtcctcttgccagtggtcgaagt
ggatttcctccttttggtactactggttatggaatgggtatgaatttagagccagggtta
agtccaagctatggtgggggctccaattttggcaacaatccagcgtatgggcgaatgtta
aatccctattacagtgggaattcaaccaggtatagtactccaataggttatggtgtgggg
aatgcaaggaatgattctgttataagcccaactactcggaatgtctggggaaatgggggt
ctcaatactgctgctaatcctgccagccctggtgctttcttgggctctggaaacggaaat
tttggagtttcatttgggaacagtggagccagttggggaccttcacatgtttcagctcaa
ggtgcaggaagtgcttctggttataccagtggaagcatgggttatgggagtggtggtgat
agcagctacgggttgggtgggggagggtatggaaggaccagtggtgctgttgcagcacca
acttcatcatttgctgggtcaactggtgtttatgaagggtcctatggggacttgtaccgc
agtggttcagtttatggtgattcgacttggcggtctggcactcctgagctagatggtgct
ggatcatttggttatgggcttggcaatataggttcagatgttactgcaaaaaattctgag
ggttatattggaagttatggtgttacaagtagacaagctaatagaggaattgctacctag
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