Manihot esculenta (cassava): 110609047
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Entry
110609047 CDS
T05761
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110609047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110609047
03036 Chromosome and associated proteins [BR:
mesc03036
]
110609047
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110609047
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110609047
PBAF complex
110609047
GBAF(ncBAF) complex
110609047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF7685
Motif
Other DBs
NCBI-GeneID:
110609047
NCBI-ProteinID:
XP_021604052
LinkDB
All DBs
Position
2:13055212..13062029
Genome browser
AA seq
792 aa
AA seq
DB search
MPASPSDGRGKWKRRKREPQITRKQQPKQEDPDDEDEDDAFEDDNNNNDHLDDDTEDPNP
NPNSNPNLPQSAALPDANNLETEVFADGGVRICDFPSVTKLAVNRPHESIFAMVALERAN
LIGESSGSGRGQAPNLENVSYGQLQALSAVPAEGLGSDQERNDGGNSAYVVTPPPIMEGK
GVVKRFGSRVHVVPMHSDWFSPAMVNRLERQVVPHFFSGKSPDHTPEKYMECRNYIVAKY
MENPEKRITVSDCQGLVVGIENEDLARTVRFLDHWGIINYCAAPPICESWNGGSYLREDP
NGEVHVPSAALKSIDSLIKFDRPRCRLKATDVYSSLACHDDGFSDLDNRIRERLSENRCT
YCSQPLPGVYYQSQKEIDVLLCSDCFHEGRFVTSHSSLDFIKMDPSKDYGDFDGESWSDQ
ETLLLLEAMELYNENWNEVAEHVGTKSKSQCILHFLRLPMEDGLLENIEVPSVSKAPDLS
SKDYHGQLHSQSNGDLPGFCLQDADAESRIPFANSGNPVMSLVAFLASAVGPRVAAACAH
ASLAALSEDNRVNSERLHGREGNFHGEVANSIQQKEDNLHGSWGPSEAEGVPLSAEKVKA
AAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQV
EKTRQRFAAERTRILSSRMGPAGATSPMNLAGASPAMVNNNIGTSRQQVMPTSSSQPTIS
GYGNNQQVHPHMSFMQRGQPQPMFPLGPRLPLSAIQPSSSASSNAMFNPSSNSQPNLNQM
LRSVSGPSSGLG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttcagatggcagaggcaaatggaagaggcgaaagcgggagccccaa
atcactcgaaagcaacaacctaagcaagaagaccctgatgatgaagacgaagacgacgcc
tttgaggacgacaacaacaataacgaccacctcgatgacgatactgaggatcccaacccc
aatcccaactcaaatccgaacctcccacaatctgctgctcttcctgatgccaacaatctt
gaaactgaggtcttcgctgacggtggggtccgcatatgcgacttcccttccgtcaccaag
cttgctgtgaatcggccccatgagtcgatcttcgcgatggtggctttagagagggcgaat
ttgatcggagagagtagtggtagtggtagggggcaggcgcccaatttggaaaatgtgtcg
tacgggcagctgcaggcactctctgctgtgcctgctgagggtttggggtctgatcaggag
agaaatgatggtgggaattctgcatatgttgtaacgcctcctccaattatggagggcaaa
ggtgttgtaaaacgatttgggagtagagttcatgtggttccaatgcattcagattggttt
tcaccagcgatggtgaatcggctagaaagacaagtggtaccacattttttctccggaaaa
tcaccagatcatacaccagagaaatacatggaatgtaggaattacattgttgctaaatac
atggagaatccagagaagaggatcactgtttctgattgtcagggcttggttgttggaatt
gagaatgaagatttagctcgaactgttaggtttcttgatcattgggggattatcaattac
tgtgcagccccaccaatatgtgaatcttggaatggtgggtcctacttaagagaggatcca
aatggtgaggttcatgtgccatcagctgctttaaagtcaattgatagtttgatcaaattt
gacaggcccagatgtaggctcaaggcaactgatgtttattcatcattggcatgccatgat
gatggattctctgacttggacaatagaattcgagagcgcctctctgaaaatcgttgcact
tattgttctcaacctcttcctggcgtatactatcagtcacagaaggagattgatgtacta
ctatgttctgactgcttccatgagggaaggtttgtgaccagtcattcaagcctggatttt
atcaagatggatccatcaaaggattatggtgattttgatggagagagttggagtgatcaa
gaaacactattgctgcttgaggcaatggagctttacaatgagaattggaatgaagttgca
gaacatgttggaacgaagtcaaaatcacagtgcattcttcattttcttcgtctacccatg
gaggatggcctgttggaaaatatagaagttccaagtgtgtctaaggcacctgatctatca
agcaaagattatcatggacaactacactcacaatcaaatggtgatctgccaggattctgt
ctccaagatgctgacgctgaaagcaggattccttttgcaaattctgggaatccagttatg
tcattggttgcttttctagcctctgctgttggaccgagagttgctgcagcatgtgcccat
gcatccttggcagctctgtctgaggataatagggtgaattctgagagattacatggtaga
gaaggtaattttcatggagaagttgcaaattccattcaacaaaaggaagacaacttgcat
ggttcatggggtccaagcgaggcagagggtgttccattatctgcagagaaagtcaaagct
gctgcaaaagctggtcttgctgctgcagcaactaaggctaaactgttcgcagatcacgaa
gagagagaaattcaaaggctgtctgctaatatcattaatcatcagttgaagagattggag
ctcaagttgaagcagtttgcagaagtggaaacttttctaatgagagagtgtgaacaagtg
gagaagacccggcaaaggtttgctgctgagcggacccgcattctgtcatcgcggatggga
cctgctggggctacttcaccaatgaacctggctggcgcttctcctgccatggttaacaat
aacattggcaccagtaggcaacaagtgatgcctacctcttcttctcaaccaactatttca
ggatatggcaacaatcaacaggtccatccccacatgtcatttatgcaacggggacaacca
caaccaatgttcccattagggccaaggctgcccctatcagctatacaaccatcctcatct
gcttcatcaaatgccatgttcaatccctccagtaattcacagcccaatctcaatcaaatg
ctgaggtctgtgtcaggacctagctctggtttaggttga
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