Manihot esculenta (cassava): 110609203
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Entry
110609203 CDS
T05761
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03420
Nucleotide excision repair
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110609203
09124 Replication and repair
03420 Nucleotide excision repair
110609203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
mesc03051
]
110609203
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110609203
Proteasome [BR:
mesc03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
110609203
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
110609203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
CUE
UBA_RAD5A
UBA_3
Dsc3_N
SOG2
Motif
Other DBs
NCBI-GeneID:
110609203
NCBI-ProteinID:
XP_021604315
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Position
2:complement(5193599..5199508)
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AA seq
415 aa
AA seq
DB search
MKVFVKTLKGTNFEIEVKPEDTLFACGFDVLLFGSSLVADVKKNIETVQGADIYPAAQQM
LIHQGKVLKDGTTLEENKVAEDSFIVIMLSKSKVPSSGASTASAAPPSQAQSASSLPSSA
TQPSTTQAPASTTQAPAQAPASTTQAPAPTVAPPQPATESTPAVVNSTSSSESDVYGQAA
SNLVAGSNLETTIQQILDMGGGSWDRETVVRALRAAFNNPERAVEYLYSGIPEQAEVQPV
ARVPASGQAANPPAHAEQPAAPTSGAPNANPLDLFPQGLPSMGSNASAGTLDFLRNSQQF
QALRAMVQANPQILQPMIQELGKQNPHLMRLIQEHQADFLRLINEPVEGEGNPLSQLASA
MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHIHEFEE
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgttaagactttgaagggtactaacttcgagatcgaagtaaaacctgaa
gacacgttgtttgcttgtggatttgatgttctcctttttggaagttcactagtagccgat
gtcaagaaaaacatagagacagtacagggcgcagacatttaccctgcggcacaacagatg
cttattcatcaggggaaagttcttaaagatggcacaacactggaagaaaataaagttgct
gaagatagttttattgtcataatgttaagcaagagcaaggttccatcaagtggagcatca
accgcatcagctgcacctccaagccaagcccaatctgcaagttctttaccttctagtgca
acacaaccatcaactactcaagctcctgcatcaactactcaagctcctgctcaagctcct
gcatcaactactcaagctcctgctccaactgtggcaccaccacaacctgccactgaatct
acacctgctgttgttaattctacttccagttcagaatcagatgtatatggacaagcggca
tcaaatcttgttgcaggaagtaatttagagaccaccattcaacagatacttgacatgggt
ggaggcagctgggaccgtgaaactgttgtacgggctctacgtgctgcatttaacaatcct
gaaagggctgttgaatatctttattctggcattcctgagcaagctgaagttcaaccagtt
gcccgagttccagctagtgggcaggctgcaaatccaccagcccatgctgaacaaccagca
gcacctaccagtggtgcgcctaatgcaaatcctctagatctatttccacagggccttcct
agtatgggttccaatgctagtgcaggcaccttggattttttgcgcaacagtcaacagttc
caagcattgcgggctatggtgcaagcaaatccccaaatcctgcagcctatgattcaggag
cttgggaagcaaaatccacatcttatgcggctcattcaagagcatcaggctgacttcttg
cgcttgataaatgaacctgttgaaggagaagggaacccacttagccagttggcctctgca
atgccacaggctgtaaccgttactcctgaggagcgtgaggcaatcgagcgtcttgaagca
atgggctttgatcgagccctagtgttggaggtattctttgcttgcaacaagaatgaagaa
ctggcagctaactatctattagatcatattcatgagtttgaggaatga
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