Manihot esculenta (cassava): 110609224
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Entry
110609224 CDS
T05761
Name
(RefSeq) F-box protein SKP2A isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110609224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110609224
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110609224
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GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
LRR_Zer-1
F-box
Motif
Other DBs
NCBI-GeneID:
110609224
NCBI-ProteinID:
XP_021604350
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Position
2:13649136..13653459
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AA seq
405 aa
AA seq
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MLICHMETRNSLLIIPGGSGFRIKSEMVGEAELRSENLNQCFERLMTVAGGNSGIGGGIS
EGGVKMEGVVITEWKDIPIELLLRIVSLVDDRTVIMASGVCSGWRDALCLGLTHLSLSWC
KNNMNNLVLSLAPKFTKLETLVLRQDKPQLEDNAIGAIANYCHDLQNLDLSKSFKLSDHS
LYALAHGCPKLTKLNISGCTAFSDGALEYLTNFCQKLKILNLCGCVKAATDHALQAIGRN
CSQLQSLNLGWCENVGDLGVMSLAYGCPDLRTLDLCGCVCITDDSVIALAYRCLHLRSLG
LYYCRNITDRAMYSLVHSRVKNKPPMWQSMKDRCNEEGLRSLNISQCTALTPPAVQALCD
SFPALHTCSWRHSLVMSGCLNLTSVHCACAVQAHRTMSSIPNPAH
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgctgatttgccacatggaaacaagaaattctcttttaataattcccggtggtagcggt
ttcagaattaagagtgaaatggtgggtgaagcagaattgaggagcgagaacttgaatcag
tgctttgagaggctgatgacggttgctggtggaaatagtgggattggtggtgggattagt
gagggaggagtgaaaatggagggagtggttatcaccgagtggaaagatatccctattgag
ctcttgctgcgaattgtttctcttgttgatgatcggaccgtgataatggcttctggggtt
tgcagtgggtggagggatgctctctgcttgggcctcacccatctctctctctcctggtgc
aaaaacaacatgaacaacttggtcctatcccttgctcctaaattcacaaaactggaaact
ttggttctgcgccaagataaaccacaactggaggataatgccattggggctattgccaat
tactgccatgatctgcagaacctggatctaagcaaaagctttaagcttagtgatcattcc
ctgtatgcattagctcatggttgtcctaaacttaccaaacttaacatcagtgggtgcact
gcatttagtgatggtgctcttgaatatctgactaacttttgccagaaattaaaaattttg
aatctttgtggatgtgtaaaggctgcaactgaccatgctttgcaggctattggacggaac
tgtagtcagctgcaatctctgaatctgggatggtgtgagaatgtgggtgatcttggagta
atgagtctagcatatggttgccctgatctcaggactcttgatttatgtggatgcgtctgt
ataacagatgatagcgtgattgctttggcatatagatgtctccatctgagatcccttggc
ctgtactactgtcgaaatatcacagacagggcaatgtattcactggttcatagccgagtg
aagaacaaacctccaatgtggcaatccatgaaggataggtgcaatgaggaaggattgcgg
agtctcaacatcagtcagtgcacagcactcacccctcctgctgtgcaagcgctatgcgac
tcatttcctgcacttcacacctgctcatggagacattccctagtcatgagtggctgtttg
aacttgacctctgtgcactgtgcctgtgccgtccaagcacaccgaacaatgagttctatt
cctaatccagctcattga
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