Manihot esculenta (cassava): 110609369
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Entry
110609369 CDS
T05761
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110609369
09124 Replication and repair
03420 Nucleotide excision repair
110609369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110609369
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110609369
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110609369
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110609369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Ribosomal_bL9m_C
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
110609369
NCBI-ProteinID:
XP_021604590
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All DBs
Position
2:complement(37351191..37371321)
Genome browser
AA seq
600 aa
AA seq
DB search
MASGQVTKRVKYKTSVKDPGTPGRLLLTMEKLAFRPNNPNSASKLDMEFIYVKNHKYTKE
GSNKAPMLNLTSNQGASYIFEFENYSDLQVCKEFVGKALSKPGETPKPADTSQSLSEQPS
TEELLLRMNLLRENSELQKLHKRFVRDGVLTDTEFWAARKKLLNGDSGNKSKQRVGLKTV
MLSDSKPLIDGRTNKVTFNLTPEIVREIFAEKPAVHQAYLNMVPNKMTDKDFWTKYCRAE
YLHHSRNAHAAAAEAAEDEELALFLKPDDILASETRRKIRCVDPTLDMEADQGDDYTHLP
DHGIARDGSKEITESQNEPYIRTLLHDLNRHGAVVLEGTAIDEEQLKDTQTVAEALIQSK
KGNKIANEEADGNANEEKLNRISKMMEIEDLRGSNDLPLAPLSIKDPRDYFDSQQACALK
TSRDAPTGTEALNCSLSAQEAYGSLRDSISQIKVVGLNDPIVTPEVAMKVRSVLTHNITS
TKYHLGKNPRESVLDGFPNKIKEDLLHHWMAVEELLRHFWSSYPITTAYLYAKVNRLKDE
MSKIDSQLQEMKESVQSDLRNQLTLLIRPMQQALEAAMQHYDADLQKRLAKSGERPNGYV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgggcaagtgacaaagcgagtgaaatacaagacctcagtgaaggaccctggc
actcctggtcgtctattattgactatggagaaattagcattcaggcctaataatcctaac
tcagcttcaaagcttgacatggagtttatatacgttaaaaaccacaaatacaccaaggag
ggatcaaataaagcaccaatgcttaatctcacctcaaatcagggtgcaagttacatattt
gagtttgaaaattacagtgatcttcaagtttgcaaagaatttgtgggaaaagccctttcc
aagcctggagagactccaaaacctgctgatacttcacaatctctttctgaacaacctagt
acagaagaactgcttcttcgaatgaacttgctgcgagaaaatagtgagttgcagaaactt
cataagcggtttgtgagggatggtgtgttgacagatactgaattttgggcagcaaggaag
aagttgctcaatggggactcaggtaacaaatcaaagcaacgggttggtcttaaaactgtt
atgctttcagattccaagccactgattgatggacggacaaacaaggttacatttaatttg
acaccagagattgtacgtgagatttttgcagagaaaccagcagttcaccaggcatacttg
aatatggttcctaataagatgacggacaaggatttctggaccaaatattgtagagctgaa
tatctccatcattcaagaaatgctcatgctgctgcagcagaggctgctgaagatgaggaa
ctagctctttttctgaaacctgatgatattttggccagcgaaactcgacggaagatcaga
tgtgttgatccaactctagacatggaagctgaccagggagatgattatacacatcttcca
gatcatggaattgcccgtgatggtagtaaggagataacagaatcacagaatgaaccatac
ataaggacattgttacatgaccttaaccgccatggagctgttgttcttgaaggaacagca
atagatgaagagcagttgaaagacacacaaactgtagcagaggcacttattcagtcaaaa
aagggaaataaaatagctaatgaagaagctgatggaaatgcaaacgaggagaaattgaat
agaatttccaaaatgatggaaattgaggatcttcgaggatcaaatgatcttcctttagca
cctctctccattaaggatccacgggactattttgattctcaacaagcttgtgcacttaaa
acttcaagagatgcacctactggaactgaagcattgaattgcagcttgagcgctcaggaa
gcttatggttctttgagggactcaatttctcagattaaagttgtgggattgaatgatccc
atagtaacacctgaagttgctatgaaggttcgttctgtattgacacataatatcacaagc
accaaatatcaccttggaaagaatcctagggagagtgttttggatggtttcccaaacaaa
ataaaggaggacctgctccatcactggatggctgttgaggagttgttgagacatttctgg
tcatcatatccaatcactactgcatatctttatgcgaaggtaaatcgactgaaggatgaa
atgtcaaaaattgattctcagctccaggagatgaaggaatctgtgcagtcagatcttcga
aatcagcttacactccttatacgtccaatgcaacaggctctagaggcagccatgcaacat
tatgatgcagacttgcagaagagattagcaaagagtggagagagaccaaatggatatgtc
tag
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