Manihot esculenta (cassava): 110609435
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Entry
110609435 CDS
T05761
Name
(RefSeq) plant-specific TFIIB-related protein 1 isoform X1
KO
K03124
transcription initiation factor TFIIB
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110609435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110609435
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
110609435
Prokaryotic type
Archaeal type
TFB
110609435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
HTH_Mga
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
110609435
NCBI-ProteinID:
XP_021604694
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Position
2:7234904..7238345
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AA seq
520 aa
AA seq
DB search
MKCPYCSSAQSRCATTSSGRSITECTSCGRVVEERQFQPYHLFHIRAQDNPLCLVTSDLA
SLHHQALHARQGDEEDPFEPTGFITAFSTWSLEPSPLSLRSSLSFSGHLAELERTLELTN
SSSNPTSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALA
TAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRF
CTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVT
GLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISSGRASTPRVDPVELTSSS
SDKDKQPENKPNKTNDVLLRGKEDAESNSNSRGARAPAWPIFRQPWLQFGSSGARTSGEK
IQNTNRGDVNELQSDCQELEEKIDKLKMDKDSTAVARPNQISSSPASCVSTITWPFRATP
SSGSSPIVQPPPKLAPGYAELKGVGYQNGGKNANVSGENK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcccttattgctcgtcggcgcagtcgcggtgcgccaccacaagctcaggccgc
tcaatcacggagtgcacatcatgcggccgagtcgtcgaggaacgtcaattccaaccttat
catctatttcacattcgagcccaagacaaccctctctgtctggttacatccgatcttgca
agcctccaccaccaggctctccatgctcgtcaaggagacgaggaggacccattcgagccc
acggggttcatcaccgcattctccacttggtctcttgagccgagcccactctccctccgt
tcttccctctcattctcgggtcacctcgctgagctggagcgcactcttgaattaaccaac
tcatcatcgaatccgacttcatccacggtggttgtcgataatctgagggcctatatgcag
attattgatgtggcttcaattttggggttggattgtgatatttcagatcatgcgtttcaa
ttgtttagggattgttgttcggctacttgcttgaggaaccgcagcgttgaagctcttgcc
actgctgctcttgttcaggccattagggaggctcaggagcccagaacccttcaggaaatc
tcaatagcagccaatgttcctcaaaaggagattgggaagtacatcaagatactaggtgaa
gctttgcaactgagtcagcctataaatagtaattccatttcagtgcatatgcctagattc
tgcacgctcctccaattaaacaaatctgctcaggaattggcgacccatatcggagaagtt
gttatcaacaaatgcttctgcactcgcaggaatcccattagcatatcggcagcggctata
tatctggcatgccaattagaagacaagcgaaagacacaagctgagatttgtaaggtgaca
ggtctcactgaggtcacactcagaaaagtctacaaggaactattggagaattgggatgat
ctactcccatccaattatactcctgctgtccctccagaaaaagcatttcctactacaaca
atttcttcaggccgtgcatctactcctagagttgacccagttgaattaacatcatcatct
tcagacaaagacaaacaaccagagaacaaaccaaataaaacaaatgatgtattgctcagg
ggcaaggaggatgctgaaagcaacagtaattctcgtggggctcgcgcccctgcatggccg
attttcagacagccctggcttcaatttggaagttctggagctaggacttcaggagagaaa
attcaaaatacaaatcgaggggatgtcaatgagttgcagtctgactgtcaagaactggaa
gagaaaatagataagctaaaaatggataaagactcaacagctgtggctaggccaaaccag
atttctagctccccagcttcatgtgtgagtacaatcacctggccatttcgtgccacacct
tcatcagggtcttctccaattgttcagcccccacctaaattagcaccaggttatgctgag
ctaaaaggtgttggctatcaaaatggtggtaaaaatgcaaatgtgagtggggaaaacaag
tag
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