Manihot esculenta (cassava): 110609453
Help
Entry
110609453 CDS
T05761
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110609453
09124 Replication and repair
03420 Nucleotide excision repair
110609453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110609453
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110609453
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110609453
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110609453
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110609453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110609453
NCBI-ProteinID:
XP_021604720
LinkDB
All DBs
Position
2:1911857..1918817
Genome browser
AA seq
768 aa
AA seq
DB search
MGHGEKGRPYKKLKSSKDEHRSIAMEDEDVYFGEAEDDYRDDGDKEGKKRDFSKLELKLD
HASRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETETIIAVLNKLSKTKLPQEMIDFIHASTANYGKVKLVLKKNRYLVESPFPEVLKRLLK
DEVISRARITPEAHGNDGFTISKTAGEIATGHDGLLNEAELAAAAEEKETHAFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFQLWSTIRDEHICRFTSD
SKERFQGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHAERTKILQAFKTSKEVNTIFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPPDSGADLSYYHLDEQLSLLAKVLNAGDDAVGLEQLEEDADDIALHKARRSM
GSMSAMSGAKGMVYMEYSTGRNKLGQGQIKSKPKDPSKRHHLFKRRYG
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggacatggtgaaaagggtcgcccgtacaagaagctcaaatcctctaaggatgagcac
aggagtatagctatggaagacgaagacgtctattttggcgaagctgaagatgattatcgg
gatgacggtgataaggaagggaagaagagggattttagcaaattagaattgaaactcgac
cacgccagtcggccgctatgggcctgcgccgatggtcgtattttccttgagactttctcc
cctttatacaaacaggcctacgatttcctcatcgccattgccgagcccgtttgcaggcct
gagtcaatgcacgaatacaatttgaccccacattcattatatgctgccgtatcggtgggt
ctcgaaactgaaaccataatagctgttctgaacaagttgtccaaaacaaagctgcctcaa
gagatgattgactttatacatgcttctactgccaattacggcaaagtgaagcttgtactc
aagaagaatcggtaccttgtggaatcaccatttccagaggtgctgaaaaggttgttgaag
gatgaagttatatctcgggcaagaataactcctgaggcacatggaaatgatggttttaca
ataagtaaaactgccggagaaattgcaactggtcatgatgggttgctaaatgaagcagaa
ttggcagctgcagcagaagaaaaagaaactcatgcatttgagattgatccttctcaggtt
gaaaatgtaaaacaacggtgcttgccaaatgctttgaattatcctatgttggaggagtac
gactttagaaatgatactgtcaatcctgatcttgacatggaactgaagcctcatgcacaa
ccacgaccatatcaagaaaagagccttagtaaaatgtttggaaatggtagagcaagatct
ggcatcattgtactaccttgtggtgctggaaagtccttggttggtgtttctgcagcatgt
cgaataaagaaaagttgcctatgtttagcaacaaatgctgtgtctgtggatcagtgggcc
ttccagttccagctatggtctaccatccgagacgaacacatttgtcggtttacgtctgat
agcaaagaaagatttcaaggcaatgctggggtggttgtgacaacatataacatggttgct
tttggtggtaaacgatctgaagaatctgaaaaaattattgaagaaataagaaatagagag
tggggactgcttctcatggatgaggtccatgtggttcctgctcacatgttccgtaaagtt
attagcctcactaaatctcactgcaaacttgggcttactgccacacttgtaagagaggat
gaaagaattacagacttgaacttccttattggtcccaaattgtatgaagcaaactggttg
gatctggtaaaaggaggatttatagctaatgtacagtgtgctgaagtatggtgtccaatg
acaaaggagttttttgctgaatatctaaagaaagaaaactccaaaaagaagcaggcacta
tatgtgatgaaccctaataagttcagggcatgtgagtttctgattcgattccatgaacaa
cagcgtggtgataagataattgtgtttgctgacaatctctttgcactcaccgagtatgca
atgaaacttcgcaaacctatgatatatggtgctaccagccatgctgagaggaccaaaatt
cttcaggctttcaaaactagcaaggaagtaaatacaatctttctgtcgaaggttggtgat
aattccatagatattcctgaggcaaatgtgatcattcagatttcatcacatgctggttct
agacgacaagaagctcaacgattggggcgtattcttagggcaaagggtaaacatcaagat
aggatggcaggtggcaaagaagagtacaatgcgtttttctattcccttgtttctacagat
acacaggaaatgtactactccaccaaaaggcagcagtttttgattgatcagggttacagc
tttaaggtgataacaagcttgcctccacctgattctggtgctgatttgagctactaccat
cttgatgaacagttgtcactccttgcaaaggttttgaatgctggtgatgatgctgttggc
ttagagcagctggaagaagatgcagatgacatagcgcttcataaagctcgtcggtcgatg
ggttcaatgagtgcaatgtcaggtgcaaaggggatggtttatatggagtacagtactgga
aggaacaaacttggtcagggacaaattaagagtaaaccgaaggatccatccaagcggcat
catctgttcaaaagacgctatggctaa
DBGET
integrated database retrieval system
