Manihot esculenta (cassava): 110609570
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Entry
110609570 CDS
T05761
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110609570
03036 Chromosome and associated proteins [BR:
mesc03036
]
110609570
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110609570
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
110609570
SLIK complex
110609570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
OAM_alpha
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
110609570
NCBI-ProteinID:
XP_021604928
LinkDB
All DBs
Position
2:complement(10883568..10904246)
Genome browser
AA seq
1755 aa
AA seq
DB search
MAFFRNYTNQTVSHSVLEEKGQGQQIGRMAGNEDIDATSSEREFNINMDAQYESEGEDAC
GMQGDAATDNEGGVSNSHVQSSGRRNTAGKWGSTFWKDCRPMVAQAASDSGHEAKSDYKN
VEVSEDDVSDGMDDRLVSEDDGQKEVGRGQKGHSDVPADEMLSDEYYEQDGEDQSDSMHY
RGFNHSNGLNSRSRSVSNNFSRSSRDLNNNEEDDDGDYNNDHDADYEEEDEEDEDDPEDA
DFDPDYGVASGHAGNKDKDWDGEDSDEDDDVDNDMDVSNEDDSYYVKKPKGRQRGKGLCH
TKSARESKSFHASSLQKRGKTSFEEDEYSAEDSDSESDGDIKSMARRGAHIRKSNARSTM
STVLSGRNNEVRMSSRSVRKVSYAESEESEEIDEGKKKKPQKDETEEEDGDAIERVLWHQ
PKGMAEEALMNNQSAEPVLLSLLFDSQPDWNELEFLIKWKGQSHLHCQWKSFADLQNLSG
FKKVLNYTKKVNEDVKYRRMLTREEIEVNDVSKEMDLDLIKQNSQVERIISDRISKDSSG
NIVPEYLVKWQGLSYAEATWEKDIDIEFAQDAIDEYKGREAAMAMQGKMVDLQRKKSKES
LRKLDEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSVLGFLQN
AQQIPGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFYNDKKVGRP
IKFNALLSTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITG
TPLQNSVEELWALLHFLDPDKFRSKDDFVQNYKNLSSFNENELANLHLELRPHILRRVIK
DVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCN
HPFLFESADHGYGGDSGINDNSKLERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRM
LDILAEYMSIRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATA
DTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLV
IQKLNAEGRLEKKEAKKGSNFDKNELSAILRFGAEELFKEDRNEEESKKRLLSMDIDEIL
ERAEKVEDEEAGGEEGHELLSAFKVANFCSAEDDGSFWSRWIKPEAVAQAEEALAPRAAR
NNKSYTEAKQSERSSKRKKKNSELLEPQERVQKRRKADHSAPSVPMIDGASAQVREWSQG
NLSKRDALRFSRAVMKFGNVNQIDLIVAEFGGSVAAAPLDAQIELFDALIDGCKEAVDGG
NLDPKGPLLDFFGVPVKANDLLNRVQQLQLLAKRISRYENPIAQFRVLMYLKPSNWSKGC
GWNQIDDARFLLGIHYHGFGNWEKIRLDERLGLSKKIAPAELQHHETFLPRAPNLRDRAN
ALLEMELAVVGGKNANVKVGRKASKKQKENIVNIPVSRTRIKKGKHSSASVSANASKNRP
QKPQRAEQLVKEEGEMSDNEELREQFKEVKWMEWCEDVMVGEIKTLRRLQRLQTTSADLP
KEKVLSKIRKYLQLIGRRIDQIVIEYEEELYRQDRMTTRLWNYVSTFSNLSGERLHQIYS
KLRQKQEEEAGVGPSHVNGSASGPVDRDGDANCFPLTRHAERQRGYKNVNAYQVSESIQK
GHDNGKFEAWKRRRRAEADTHPQFQPPLQRPMSNGARLMDPNSLGILGAAPSDNRPLRMR
QTSFPPRQNYSSGIK
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggctttttttaggaactatacaaaccaaacagtttcacatagtgtactggaagaaaaa
ggccagggacagcaaattggtagaatggcggggaatgaagacatagatgctacttcaagt
gagagagaattcaatatcaatatggatgcacaatatgagagtgaaggggaagatgcttgt
gggatgcagggtgatgcagctactgacaatgaaggtggggtgagtaattcacatgttcag
tcttcaggaaggagaaatacagctggcaaatggggctcaacattctggaaggactgccga
cctatggttgctcaagcggcatctgattctgggcatgaggcaaaatcagactataaaaat
gtagaagtgtcagaggatgatgtgtcagatggaatggatgatagattagtgtcagaagat
gatgggcaaaaagaagttggtagggggcaaaagggccactcagatgtgcctgcagatgaa
atgttgtctgatgaatactatgaacaggacggggaagatcaaagtgattctatgcattac
agaggatttaaccactcaaatgggttgaattctaggtcgcgttctgttagtaataacttc
tctaggagttcaagagatttaaacaataatgaagaagacgatgatggcgactataacaat
gaccacgatgctgattacgaagaagaggatgaggaagatgaggatgatcctgaggatgca
gactttgaccctgattatggtgttgctagtggccatgcagggaacaaggataaagactgg
gatggtgaagactcagatgaagatgatgatgttgataatgacatggatgtctcaaatgaa
gatgattcatactatgtgaaaaagcccaagggtaggcaacgaggtaaaggcttatgtcat
acgaaatctgctagggaaagcaagtcatttcatgcttcaagtctacaaaagagaggaaaa
acatcatttgaagaggatgagtattcagctgaggactctgacagtgaaagtgatggagat
attaagagtatggcaaggagaggagcgcacatccgtaaatctaatgctagatccactatg
tcgacagttctcagtggaagaaataatgaggttcgcatgtctagtaggtctgttcgaaag
gtatcatatgctgaaagtgaagaaagtgaagaaattgatgaagggaagaagaaaaagccc
cagaaggatgaaaccgaagaggaagatggtgatgccattgaaagagtgctgtggcatcag
ccaaaaggcatggctgaagaagctctaatgaacaatcaatctgcggagcctgttctgtta
agcctcttgtttgattctcaaccagattggaatgaattggagtttttaatcaaatggaaa
ggccagtcacatttgcactgccagtggaaatcttttgccgatttacaaaatctgagtggt
tttaagaaggtattgaactacacaaaaaaagtgaatgaagatgtgaagtatcggagaatg
cttacacgtgaggagattgaggtcaatgatgtgagcaaggaaatggatttggatcttatc
aagcaaaatagtcaggtggagaggattatttctgaccgaatcagtaaagatagctctggt
aatattgtgccagagtacttggtcaagtggcaaggactatcttatgctgaagcaacctgg
gagaaagatatagatatagaatttgctcaagatgcaattgatgaatacaagggacgtgag
gctgcaatggccatgcaagggaaaatggtggatctccagcgcaagaaaagcaaagaaagt
ttaaggaagcttgatgaacagccagaatggttgaggggaggaaagcttcgtgattatcag
cttgagggtttgaattttcttgttaatagttggagaaatgatacaaatgtcattttagct
gatgagatgggccttgggaaaacagttcagtcagtttccgtgcttggttttttacagaat
gcacagcaaataccagggccatttcttgttgttgtaccgttatccactctgtccaactgg
gctaaagaatttaggaagtggcttcctgacatgaatgttattgtatatgttggtacacgt
gccagcagagaggtttgtcagcaatacgaattctacaatgacaaaaaggttgggaggccc
ataaaatttaatgcactattgagtacatatgaagttgttctgaaggataaggcagtcctg
tcgaagatcaaatggaattatctcatggttgacgaagcacataggttaaagaatagtgag
gcacagttgtatacaactctatcggaattcagcaccaagaacaagttgttaataactgga
actccattacagaacagcgtggaagagctatgggctctgcttcacttccttgatcctgat
aagtttaggagcaaggatgattttgttcagaattacaagaaccttagctcattcaatgaa
aatgagcttgccaatctgcatttggaattgagacctcacattctcaggagagttatcaag
gatgtagagaaatccttgccaccaaagattgagcgtattctgagggttgagatgtcccca
ctccagaaacagtattataaatggattttggaacgcaactttcatgacctaaacaaagga
gttcgtgggaatcaggtttcacttttaaatattgtagtagaattaaagaaatgctgcaat
catcccttcctatttgaaagtgcagatcacggttatggtggggattctggcattaatgat
aatagcaaattggagagaattatcttgagcagtgggaagctggttatacttgacaagttg
cttgtcaggttgcatgagacaaaacatcgtgttctgattttttcgcagatggttagaatg
ttagatatactggcagaatatatgtcgattaggggtttccaatttcaacggcttgatggt
agtacaaaggccgagttgcgtcagcaggctatggatcacttcaatgcacctggcagtgat
gatttctgtttcctcctttcaactcgggctggtggcctaggcatcaatcttgctacagct
gacacagtaataatatttgattcagactggaatccccaaaatgacttgcaggcaatgagt
agagctcataggattgggcaacaagaagtagttaacatatatagatttgtcacgagcaaa
agtgttgaggaggatatattggagcgagcaaagaaaaagatggttcttgatcatttggtg
atccaaaaattaaatgcagagggtagattggaaaagaaagaagcaaagaaagggagtaac
tttgacaaaaatgagctttctgcaattttaaggtttggtgcagaggaactgtttaaagaa
gataggaatgaagaagaaagcaagaagagattattaagtatggatattgatgaaattctt
gaaagagcagagaaagttgaagatgaggaagctggaggagaggaagggcatgaattgttg
agtgcttttaaggttgccaatttctgtagtgctgaagatgatgggagtttttggagtcgt
tggataaaacctgaagcagtagcccaagctgaagaagcattggcccctcgtgctgctagg
aacaacaagagttatactgaggctaagcaatctgagagaagtagcaaaaggaaaaagaaa
aattctgagcttctggaaccacaggagcgagtgcagaaacgtcgcaaagcagatcattct
gccccttcagttcctatgattgatggagcatctgcccaagtgagagaatggtcacaaggg
aatctgtctaagagagatgcattgcgtttttctcgtgcggttatgaaatttgggaatgtg
aaccaaatagacttaatagttgctgagtttggtgggtcagtggcagcagctccacttgat
gcacagattgagctttttgatgctctgatagatggttgcaaagaagcagttgatggagga
aatctagatccaaagggtcccttgctagactttttcggtgtccctgtgaaggctaatgat
ctgctgaaccgtgttcaacaacttcagctcctggcaaagcgaattagtcgatatgaaaac
cccattgcacaatttcgggttctaatgtatctcaaaccttcaaactggtctaagggctgt
ggctggaatcagattgatgatgcaaggtttcttttgggaatacactatcatggatttggc
aattgggaaaagataaggttggatgaaaggcttggcctgtcaaagaagattgctccagcg
gagctacaacaccatgagaccttcctgccacgtgccccaaatttgagggaccgtgctaat
gcactcctggaaatggaacttgctgtggttggtgggaagaatgctaatgtgaaggtgggt
cgtaaggcctccaagaagcaaaaggaaaacattgtcaacatcccagtatctcgcaccagg
atcaagaaaggaaaacatagttctgcatctgtcagtgccaatgccagcaagaatcgacct
cagaaacctcagagagctgaacagttggtgaaagaggagggtgaaatgtcagacaatgag
gaattacgtgagcagtttaaggaagtgaagtggatggaatggtgtgaagatgtcatggtt
ggtgaaattaaaacccttagacgtcttcaaaggcttcagactaccagtgctgatcttcca
aaggaaaaggttctttctaagattcggaaatacctacagcttattgggcggaggatagac
caaattgtcatagagtatgaggaagagctttatcggcaagataggatgactacgagatta
tggaactatgtttctaccttctcaaatttatcaggggagagacttcatcagatatattct
aaacttaggcaaaagcaggaagaggaagcgggggttggaccctcccatgtgaatggctct
gcatctggtccagtagacagagacggtgatgccaattgttttcctctaacgcgccatgct
gagaggcaaagagggtataaaaatgtgaatgcctatcaagtgtcagaatcaattcaaaag
ggtcatgataatgggaaatttgaagcatggaaacggcgaagaagagctgaagctgatact
catcctcagtttcaaccccccttgcagagaccaatgagtaatggtgcccgtttaatggat
cctaattcactgggtattcttggggctgcaccatctgataatagacctttacggatgcgc
caaacttcttttccaccaagacaaaattactcatcagggataaagtag
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