Manihot esculenta (cassava): 110609789
Help
Entry
110609789 CDS
T05761
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110609789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110609789
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110609789
mRNA cycle factors
Common to processing body (P body) and stress granule
110609789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
110609789
NCBI-ProteinID:
XP_021605282
LinkDB
All DBs
Position
2:10707405..10714222
Genome browser
AA seq
978 aa
AA seq
DB search
MMIVQMDKMSAPSSRERAQRLYEKNIELENKRRKSAQARIPSDPNAWQQMRENYEAIVLE
DHGFSEQHNIEYALWQLHYRRIEELRAHFSAALANGGSNTSQGVKVPTRPDRITKIRLQF
KTFLSEATGFYHDLILKIRAKYGLPLGYFSEDSDNRVVLEKDAKKSSDMKKGLISCHRSL
IYLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVA
VYHYFRSLAVDNPFTTARDNLIVAFEKNRQIYTQLLGDSKGSVVKDSSVRLTSKGRGKGE
SKPAVKDTNLEANVVNDGTSNIREIHKSFCIRFVRLNGILFTRTSLETFATVLSLVSGDF
CDLLSRGPEEQLNFGADVVENAIFIVRLISILIFTVHNVRREAEGQTYAEIVQRAVLLQN
ALTAVFELMGHILERFVQLHDPSASYLLPGILVFVEWLACCPDVASGSDADEKQSTVRLK
FWNHCTSFLNKILSFWSMSLDDNEDDTCFKNMSHYEEGETGNRLALWEDFELRGFLPLLP
AQSILDFSRKHSFGSEGSKEKIARVKRILAAGKALANIARIDQKTIFYDPRMKKFVIGVE
PQISDVSMLAFDSGLPKTNDLVQEIQPQKVINVGVLPPNAQPFIEGDEEDEVIVFRPAAT
EKRNGLSPKWAPYDSLKQNPDVSADLKFYGGAVSSPLDMLQHSAFDAGSQISASSGISAS
QHLQPIQPPASKWLMEEAASLANSLNAVRFMENGHVTEHDLLKDLGIGHPATHSLPLQQP
VNVNASFFYNQTKVPEAVIPSKVDVIAENLAVKTSAALPAGLKKTPVSRPVRHLGPPPGF
NHVPLKQVNEHVSGADLMSENSLTDDYSWLDGYQLPSSTKGSVLNNMSTITSEAMPQYIN
SSNGLSGTASFPFPGKQVSSLQFQTEKQKGWQNYQAFEHLRLQQEQQLQQQLLNGNQQFT
PMSEQYHGKSIWSGRYIV
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtgcagatggataaaatgtctgctccttcgtctcgggagcgtgcacaacgt
ctttatgagaagaatattgaactggagaataagcgtcggaagtcagctcaggcaagaatt
ccgtcagatcccaatgcctggcaacagatgcgtgagaactatgaagctatagttcttgaa
gatcatggtttttctgagcagcacaatatagaatatgctctttggcagttgcattatagg
cgcatcgaggaactgagagcccacttcagtgctgccttagctaatggtggctcaaataca
tctcagggagtgaaagttcccactcgaccagaccgtattacaaaaataaggctgcagttt
aaaacatttctttcagaagcaactggattctatcatgatctcatcctgaaaatcagagcg
aagtacgggcttcctctgggatacttctctgaggattcagataatagagttgttttggaa
aaagatgcaaaaaaatcgtccgatatgaagaaaggtttgatctcttgtcaccgcagttta
atatacttgggtgaccttgcaaggtacaagggactttatggggaaggtgactcaaagaca
cgcgaatatgcagctgcttcaagttactatttgcaagctgcttccttgtggccatctagt
gggaacccccatcatcagcttgctattttggcatcctattcaggagatgagttggtggct
gtgtatcactattttaggagtctggcggttgataatccctttacaacagcacgagataac
ctgattgttgcttttgagaagaaccgacagatttacactcaactacttggggattctaaa
ggatctgtggtcaaggattcatctgtgcgcttgaccagcaagggtagagggaaaggggaa
tcaaaacctgcagttaaagacacaaatttggaagccaatgttgtgaatgacgggacatct
aatatccgtgagatacataaatcattctgtatccggtttgtccgcctgaatggtattcta
ttcacacgcaccagcctggagacatttgctacagttctctcattggtcagtggtgacttc
tgtgatcttctttcacgtgggccagaagagcagctaaattttggtgcagatgttgttgaa
aatgccattttcattgtacggcttatttctattcttatcttcactgttcacaatgtgagg
agggaggctgagggtcagacgtatgctgaaattgttcagcgtgctgttctactgcagaat
gcgcttactgcagtttttgagttaatgggacacatattggagaggtttgtgcagctgcat
gatccttctgctagttatctcttacctggcattctggtttttgtagaatggttggcctgt
tgccctgatgttgcatcaggcagtgatgctgatgagaaacagtccactgttagattgaag
ttttggaaccattgtacatcattcctgaataagatcttgtcattttggtcaatgtctctt
gatgataatgaagatgatacatgctttaagaacatgagccattatgaagaaggagaaacc
ggaaataggcttgctttatgggaggattttgagttgaggggatttttgccacttcttcct
gcacaaagcattttggacttttcgaggaagcactcttttggaagtgaaggcagtaaggaa
aagatagctcgtgttaaaaggattctagctgctggaaaggctttagcaaatattgctagg
attgatcaaaaaacgatattttatgatccaaggatgaagaaatttgttataggtgtggag
cctcaaatttcagatgttagcatgttggcttttgattctggcctgccaaaaactaatgac
ttggtgcaagaaatccagcctcagaaagtcattaatgtgggagttttgccgcctaatgca
cagccgtttatagaaggggatgaggaggatgaagttattgttttcaggccagcagcaaca
gagaagcggaatggacttagtccaaaatgggctccctatgatagcttgaaacagaatcct
gatgtatccgctgatctgaaattctatggtggtgctgtttcatctccgcttgatatgttg
cagcattctgcttttgatgcaggttctcaaatatctgcatcatctggtattagtgcctcc
cagcatctgcagccaattcaaccacctgcctcaaagtggttaatggaagaagctgcctca
cttgcaaatagcttgaatgctgttaggttcatggagaatggacatgtaacagaacatgac
ttgctaaaagatttaggcataggccatcctgctacacattcacttcccctccaacaacct
gtaaatgttaatgctagctttttctacaatcagactaaagtgccagaagctgtgattcca
tcaaaggttgatgttattgctgaaaatttggctgtgaagacatcagcagctttgccagca
ggcttgaaaaaaactcctgtcagccgacctgtaaggcaccttgggcctcctccaggcttt
aatcatgttcctcttaaacaagtaaatgaacatgtgtctggcgcagatttgatgagtgag
aattcactgacagatgactatagttggttggatggctatcagttgccatcatcaacaaaa
ggctctgtgctcaataatatgtctaccatcacttctgaagcaatgcctcagtatatcaat
agcagtaatggcttgagtggaacagctagcttcccttttcctggaaaacaggtgtcatcc
ctgcaattccagacagaaaaacagaaaggatggcagaattaccaggcctttgagcatctg
aggttacaacaagagcagcagttgcagcaacaactcctaaatggaaatcagcaatttact
ccaatgtctgagcaatatcatggaaagtccatctggagcggtcgttatattgtgtga
DBGET
integrated database retrieval system