Manihot esculenta (cassava): 110610293
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Entry
110610293 CDS
T05761
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110610293
Transcription machinery [BR:
mesc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
110610293
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
ASMase_C
Sigma_1s
Motif
Other DBs
NCBI-GeneID:
110610293
NCBI-ProteinID:
XP_021605843
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Position
3:5671148..5674447
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AA seq
540 aa
AA seq
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MGVGFRPSLKCGFPVHSQFVSNSPSRLPSSSVKGREGSFNLTRLSFLSVISEEGDILYRD
PLKAFACSPGLQILENEHTQVEGSKMIFGKGSHNTIDILVPPSTSSSKDRHSRFSLLLEN
LNILEESFADSDVLKLERDILMHLGRLGALKLFNTCLRRTFSDVPTETVGECEINGISNN
HVNEVIVRSAKKEERKSRRKRASSKTNLVASLSLPSKSIQSGPGKPTYSSAKKASNSQSR
RLVIARNEAEMSRGVKMVAELEKIRTTLEEEAGRVVSWSCWAEAAGLDMKELQQRLRFGW
HCRDELIRSTRPLVLYFARNYRGMGIALEDLLQAGTVGVLQGAERFDHTRGYRFSTYVQY
WIRKSMSKIVTRHARGIQIPCTLSQAINQIQKARKALNTRYGKYADDTEIAKFTGLSLAK
IESASKCLRVVGSIDQKVGDSLNAKYLEFMSDTSIQRPEEVVMRQHMIKDIHNLLRGMES
RERQVLILRYGLKDYQPKSLEEIGKLFHVSKEWVRRLEKKVITRLRNEEICRNLRHYMNP
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcggttttaggccaagtctcaagtgcggtttcccagttcactctcagtttgtc
tccaattccccatccaggctcccttcttcttctgttaaaggcagggagggttctttcaac
ctgacgaggttatcttttctgtctgttatttctgaagagggtgacattttgtatagagat
cctctcaaggcatttgcatgttcacctggactgcaaatcttagagaatgaacatacccaa
gtggaaggatctaagatgatttttggcaagggatctcataacacaattgacattttggtt
ccaccttcaacttcaagctcaaaagacaggcattcaaggtttagtttgttattggagaat
cttaacatcttagaggagtcatttgctgattctgatgtgttgaagttggaaagagatatt
ctaatgcatttaggaaggcttggagctctaaaattattcaatacatgcctaaggaggacc
ttttctgatgttcctactgaaactgttggagagtgtgaaatcaatggcatatcaaataat
catgtaaatgaagttattgtccgttctgcaaaaaaggaagaaagaaaatctagaagaaaa
agagcttcttcgaaaactaatctagttgcttctttgtcattgccttcaaaatccattcaa
agtggtcctggaaagcctacttattcttctgccaaaaaagcttcaaattcacagagtaga
agattggtgattgctagaaatgaagcagaaatgtccaggggagttaagatggttgcagag
ttggagaagatcagaacaactttggaagaggaagctgggcgagttgtcagctggagttgc
tgggctgaagcagctggacttgacatgaaggagctgcagcagcggttgcgttttggttgg
cattgcagagatgagctcatcaggagcactcgcccattagttctatactttgccagaaat
tacaggggtatggggatagccttggaagatttacttcaggctggaactgtgggcgtcttg
caaggtgcagaaagatttgatcacacaagggggtacagattctcaacttatgtacagtac
tggatacgaaaatcaatgtcaaagattgtcactcggcatgctagagggattcaaattcct
tgcacactaagccaagcaataaaccagatacaaaaagctcgaaaagcccttaacacccgc
tatgggaaatacgccgatgacactgaaattgccaagttcacgggtctttctttggctaaa
attgaatcagcaagcaaatgccttagggttgtgggttcaatcgatcaaaaagtcggagat
agtctcaatgcaaaatatttggaatttatgtctgatacgtcgatacagagacctgaagaa
gttgtcatgaggcaacacatgataaaagacatacataatcttttaagaggcatggaatca
agagagaggcaagtattaattcttagatatggtctcaaggattatcaacccaaatcactt
gaggagattgggaagctttttcatgtgagcaaggagtgggtaaggaggttagagaagaaa
gttataacaagacttaggaatgaagaaatctgcagaaacttaagacattatatgaatcca
tag
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