KEGG   Manihot esculenta (cassava): 110610591
Entry
110610591         CDS       T05761                                 
Name
(RefSeq) splicing factor U2af large subunit A
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110610591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110610591
Spliceosome [BR:mesc03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110610591
 Complex B
    110610591
SSDB
Motif
Pfam: RRM_1 RBD_DEAH11 RBM39linker
Other DBs
NCBI-GeneID: 110610591
NCBI-ProteinID: XP_021606269
LinkDB
Position
3:28860592..28869784
AA seq 899 aa
MSRSARHKEKYGKISEIPQDRYHEGTAARTRPLSFDEIMSKRKNKKQLFENGKGGVVEDT
KGDGSTEKVSHHYGSDRVDSRSKDFFPVAQRLSSEVDAKASSKRKEENTYMKDGYLAKSK
DREIQDSETKSRAKIDRDQKAKGKNDEKNYDRRKKDERRSSNAENEALNKYSREVIKRDR
HVDDSRGRFERENKRKYRNGVDQKNRDRHSTRKHDPGRGHDSEASDRKERKELPKSNFEE
LKLKRRRSRSREHVNKKRRSMSPLPRSPKHASYYGREHGEPSSSLKGRSDVDKSKITNSG
STSSAHYKRHGSSASGLGGYSPRKRRTEAAAKTPSPSKKSPPVKRSPEKKVAKWDLAPGA
DMLSVSVPSSFQLSNQSASSNVHEAVSVVHVASTPIKPLSLVSFNILPTNKNDSIDSVQL
TQATRPMRRLYVENLPDSASEKAVMECLNNFLIASGANHIRGSLPCISCIIHKEKGQALV
EFLTPEDASAALAFDGFSFFGSILKIRRPKDFVEVATGEPEKSMTAGNSISSIVKDSPHK
IFVGGIPKVLSSKMIMEIASAFGHLKAYHFENSDNLNESYAFLEYADQSVTFKACAGLNG
MKLGGQVITAVPAVPNASTLENSGNPPFYGIPEHAVPLLKKPTQVLKLKNVFDPEALLSL
SHTEIEEILEDVRLECGRFGAVKSVNVVQYDATPISTLVACGVDDCIESAGLVNDETEMR
KETVDCKIVQGDGMEDGKPTSNLMEDESFQAGSVDSDSSIENLDGKSIFNSQELTQEASK
DESECSNDKVAVNIQKGTSVEDKLPNREELNVEEVGGNIKESSLDDDIVGLDATVKGDHK
EEESCDLGHIFEPGCVFVEFGRTEASCMAAHCLHGRLFDNRTVAVAYVPLDVYQTRFSK
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgagcagatctgctcgtcataaagagaagtatggaaaaattagtgagatcccccaagat
cgctaccatgaaggaactgctgcacggacaaggcctttaagctttgacgagattatgtca
aaaaggaaaaacaaaaagcaactgtttgaaaacggaaaggggggagttgtagaagataca
aaaggagatggaagtactgaaaaagtttctcatcattatggatctgatagggttgattca
cgaagtaaagattttttccctgttgcccaaaggctttcttcagaagttgatgcaaaggca
agttccaaaaggaaagaagaaaatacttacatgaaggatggctatttagctaaaagcaaa
gatagagaaattcaggattcagaaaccaaatcgagggccaaaatagacagagatcagaaa
gctaaaggcaagaatgatgaaaaaaattatgacaggagaaaaaaagatgagcgcagaagc
agtaatgctgaaaatgaagctttaaataaatattcaagggaagtaattaaaagagataga
catgtggatgatagtagaggaagatttgagagggaaaacaagagaaaataccgaaatgga
gttgaccagaaaaatagagataggcattccacaagaaaacacgatccaggaagagggcat
gattcagaagcttcagacagaaaggaaagaaaggaactacctaaatctaattttgaggaa
ttaaagctgaaaagaagacgatcaaggagtcgagagcatgtgaacaaaaaaaggaggtct
atgtcgccattgccaaggtcaccaaaacatgcatcttattatggtagggaacatggggag
ccatcctcatcacttaaagggagatctgatgttgacaagagcaaaattacgaacagtggt
tctacttctagtgcccattataagagacatggtagctcagcaagtgggcttggtggctat
tcaccaaggaagagaagaactgaggctgctgcaaagactccttccccaagtaaaaaatca
cccccagttaaacgctcaccagagaagaaagttgctaaatgggaccttgcaccaggagca
gacatgctttctgtgtcagttccttctagttttcaactgtcaaaccaaagtgcatcctca
aacgtgcatgaagcagtcagtgtagttcatgttgcttcaactccaatcaagcctctttca
ctggtttcgttcaatattttgccaaccaataagaatgactccattgactctgttcaacta
acacaagctacccgtcctatgcggaggctttatgtggagaatttaccagactcagcctca
gagaaagctgtaatggaatgtcttaacaattttttgattgcttcaggtgccaaccatatc
cggggatccctgccatgtattagctgcatcatacacaaagaaaagggccaagcccttgtc
gaatttcttacacctgaggatgcttcagcagctcttgcttttgatggcttttcattcttt
ggttccatattaaaaatccgacgcccaaaagactttgttgaagtggcaactggtgaacca
gaaaagtcaatgactgcgggcaattcaataagcagtattgtgaaggattcaccacacaag
atcttcgttggtggaattccaaaggtcctttcttctaaaatgattatggagattgcaagc
gcttttggacatttaaaggcctatcattttgaaaacagcgacaatctcaacgagtcttat
gcttttctagagtatgcagaccaatcagttacattcaaagcttgtgctggactgaatggt
atgaagttaggagggcaagtgataactgcagttccagctgttccaaatgcatcaaccttg
gaaaatagtggaaacccaccattctatgggattcctgagcatgcagtgccacttcttaag
aagcctacacaagttctgaagcttaaaaatgtgttcgatccagaagcccttctgtcactc
tctcatactgaaattgaagaaatactggaagatgtacgtctagagtgtggaaggtttggc
gctgtcaaatctgttaatgttgtccagtatgatgcaactcccatctccaccttggtagca
tgtggagtcgatgattgtatagaatctgctgggttagtaaatgatgaaacagagatgcgg
aaagaaactgtggactgtaaaattgtgcaaggcgatggtatggaggatggtaaacctact
agcaatcttatggaagatgagtcatttcaagcaggttcagttgatagtgattcgtccatt
gaaaacctagatggcaagagcatattcaactcccaagaacttactcaggaggcctcaaaa
gatgaatcagaatgctctaatgacaaggtcgctgttaatattcaaaagggtacgagtgtg
gaagacaaattgcccaatagagaagagttgaatgtggaggaagtaggtggaaatataaag
gaatcttctttagatgatgatatagtaggattagatgctactgtgaaaggagaccataag
gaggaagagagttgtgatcttggccacatttttgagccaggctgtgtttttgtagaattt
ggaagaacagaagcctcgtgtatggctgcacattgtttgcatggacggttatttgataat
cgcactgtggcagtggcatatgttcctctggatgtttaccagactaggttttcgaaatga

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