Manihot esculenta (cassava): 110611282
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Entry
110611282 CDS
T05761
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110611282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110611282
03036 Chromosome and associated proteins [BR:
mesc03036
]
110611282
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110611282
Coactivators
SAGA/TFTC/STAGA complex
110611282
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110611282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
110611282
NCBI-ProteinID:
XP_021607192
LinkDB
All DBs
Position
3:complement(5310062..5316403)
Genome browser
AA seq
916 aa
AA seq
DB search
MDPSIMKLLEEDEDETMHSGAEVEAFQAALNRDIGGDASTSQPSDSAVLSHEMNQTPSQP
FSNWQTTTQDENANGVIQQQQQQEQHSSVMELKRHASAAENQQLNNDATQGSRNLLLHQK
QPQDDVQKGQAKQVPLQTPRTTGMQISERNSMPLSERDKLQNSDTEPQYMKVNMVNQQNQ
QTMGMEQPGNVKNQAKQIPFVLLLPALKPHLDKDREMQLQTLFNKLRKNDIAKEQFVRLM
RNIVGDQVLRLAVAQLQSQPGSTQSQLQSQAFARQHNVRMPVSASASSAVQVLADSSYPS
AENNAQKSREVERQPDSLGMQVSQMPSSSASIVNQDREHSSISMPGHSKQQQHLHFPPTS
FPMYGSNSATYHPYSGTNVNTSGSSMKPQSHDMQMRQISHQTMGTTQVGGSTQAMNMMSV
PKFERQNAVADPNRVQSGSISQYANKSALQQSSVPWQAPTNKEQSSAPFSSTNYVKQEPV
EQAVEQQQKSQVSNPQVVSATPAEQGNPVPGNSKDVSLEKQTSKVGFSPPIGLAPSSSVS
PSISTPLEPNAQVGSRIPSVVASAGVNARTPPKKPSIGQKKPLEPLGSSPPASSKKQKVS
GAFSDQSIEQLNDVTAVSGVNLREEEEQLFSGSKEESRVSEASRRVVQEEEERLILQKIP
LQKKLAEIMAKCGLKNINNDVERCLSLCVEERMRGLISKLIRLSKQRVDAEKPRHRTVIT
SDVRQQIMAMNQKAKEEWEKKQAEAEKLRKVNDPEGDNGAEVDNEKDEGRMKSVKVNKED
DDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGTEATSSSQSSKEVNYKSPST
TGRNIKDNQETDKRSPAVASKAARKTGRNQSVPEVKIARTISVKDVVAVLEREPQMSKST
LIYQLYERTRSDHPLE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggacccttcaataatgaagctcctcgaagaagacgaggatgaaactatgcattccggt
gctgaggtggaggcgtttcaggctgccctcaatcgagatattggaggcgatgcgtccact
tctcagccgtccgactccgcagttttatcccatgaaatgaatcaaacacccagtcagcca
ttttcaaattggcaaactactacacaagatgaaaatgccaatggtgtaatccagcaacaa
cagcagcaagaacagcactcatctgtaatggagctaaagcggcatgcttctgctgctgaa
aatcagcaactaaataatgatgccacacagggatccaggaacctcctattacatcagaaa
caaccccaagatgatgttcaaaaagggcaggcaaaacaagttcctcttcagactcctcga
acaactgggatgcagatttctgaaagaaattctatgccactatctgaacgtgacaaattg
caaaattcggacactgaaccgcaatacatgaaagtaaacatggttaatcaacagaatcaa
cagaccatgggcatggagcagcctggtaatgtaaagaatcaagccaagcagataccattt
gtgttattgttgcctgccttaaagccacatcttgataaagacagagagatgcaacttcag
actctctttaataaattgaggaaaaatgatattgcgaaagagcagtttgtcaggcttatg
agaaacattgtgggggaccaagtgctaagattggcagttgcacaattgcagtcgcagcca
ggttccacccaatcccagttacaatctcaagcttttgcacgccaacataatgtgagaatg
cctgtcagtgctagtgcctcttcagcagtccaagtgctggctgattctagctatccatct
gcagaaaataatgctcagaaatctcgagaggtggaacgtcagccagattctcttggaatg
caagttagccaaatgccttcttccagtgctagcatagtcaatcaagatagggaacactct
tcaatttctatgccaggacatagcaagcagcagcaacatttgcactttccaccaacttcc
tttccaatgtatggaagtaatagtgcgacttatcacccatattctggaacaaatgtcaat
acttcaggatcatccatgaagccacagtctcatgatatgcaaatgaggcaaatttcacat
caaaccatgggcacaacacaagtagggggttcaacccaagcaatgaacatgatgagtgtg
ccgaaatttgagaggcaaaacgctgttgctgatcccaacagagtgcagagtggttctatt
tcccagtatgcaaacaaatcggccttgcaacaaagttcagttccatggcaagcaccaacg
aataaagagcaaagttctgcccctttctcatcaacaaattatgtaaaacaagaaccagtt
gaacaggctgttgagcagcagcagaaatctcaggtgtctaaccctcaggttgtatctgcc
acacctgctgaacaggggaacccagtgccaggaaattcaaaggatgtctctttagaaaag
caaacttcaaaagttggtttctctccacccattggtttggcaccctcaagttcagtttct
ccttccatttcaactccattggagccaaatgcacaggttggctctcggatcccatctgta
gttgcttctgctggagttaatgcaagaacacctccaaagaaaccttcaattggccaaaag
aagccacttgaaccacttggttcttctccacctgcatcaagtaagaagcaaaaagtttct
ggggccttttcagatcaaagcattgaacaacttaatgatgtcactgctgtcagtggagtt
aatctaagggaagaggaagaacagctattctctggatccaaggaggaaagtcgagtttca
gaagcatctcggagggttgtacaagaagaagaagaaaggttgattttgcagaagattcca
ctgcagaaaaaattggcagagatcatggctaaatgtggtttgaagaatattaataatgat
gtggagcgatgcttgtcgttgtgtgtggaggaaagaatgcgtggactaataagtaaactg
atcaggctatccaagcagcgggttgatgctgagaagcctagacatcggactgtaatcacc
tcagacgttcgacagcaaatcatggcaatgaaccagaaagctaaggaagaatgggagaaa
aagcaggcagaagctgaaaagcttcgaaaagttaatgatcctgagggtgataatggagct
gaagttgataatgagaaagatgaaggtcgtatgaaatcagtaaaggtaaacaaagaggat
gatgacaaaatgaggacaacagctgcaaatgttgctgctcgagctgctgttggtggagat
gacatgctatcaaaatggcaactcatggctgagcaagcacgccagaaacgtgaaggtggg
acggaagcaacatccagttcccagtcatccaaggaagttaactacaagagtccttcaaca
actggaagaaatataaaggataatcaagaaacagacaaaaggagcccggcagttgcatct
aaggctgctaggaaaactggaaggaaccaaagtgtgcctgaagtcaagattgctcgcact
atctccgttaaggatgtagttgcagttctggaaagagaaccccagatgtccaaatctact
ctgatttatcaattgtacgagagaacccgatctgaccatcctcttgaatag
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