Manihot esculenta (cassava): 110611336
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Entry
110611336 CDS
T05761
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110611336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110611336
03036 Chromosome and associated proteins [BR:
mesc03036
]
110611336
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
110611336
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
110611336
RSF complex
110611336
WICH complex
110611336
B-WICH complex
110611336
NORC complex
110611336
BRF complex
110611336
NuRF complex (fruit fly)
110611336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
DEAD
HDA2-3
Myb_DNA-binding
DBINO
CHDII_SANT-like
AAA_14
DUF1870
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
110611336
NCBI-ProteinID:
XP_021607289
LinkDB
All DBs
Position
3:31041766..31050080
Genome browser
AA seq
1067 aa
AA seq
DB search
MAKPSYQQESSDDALSNGSSSSDEEQINEQINEEEEDEEELEAVARSADSDDDEAADDNG
DDVNGDADDVEEDGNNNEISKREKERLKEMEKLKKHKIQEILDAQNAAIDADMNNKGKGR
LKYLLQQTELFAHFAKPDQSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLSGAGNTR
LVAQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGI
TGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREDLLVAGKFDVCVTSFE
MAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELW
SLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK
ETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNVAMQLRKCCNHPYLFQGAEPGP
PFTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRID
GNTGGEDRDASIETFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQ
DRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQ
MVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDSAELYD
FDDDKDENKFDFKKIVSDNWIEPPKRERKRNYSESDYFKQTMRQSGPAKPKEPRIPRMPQ
LHDFQFFNTQRLSELYEKEVRFLMQTHQKNQIKDTIDVDEPEESGEPLTAEELEEKERLL
EEGFSSWSRRDFNTFIRACEKYGRNDIKSIVSEMEGKTEEEVERYAKVFKERYKELNDYD
RIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICM
VHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQ
ARKEKKLAKNMTPSKRAMGRQTESTSSQKRRKQLTMDDYVSSGKRRK
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccctcgtaccaacaggagtcctctgacgacgctctatccaatggttccagt
tcgtccgatgaggagcaaatcaacgagcagatcaatgaggaggaggaggacgaggaggag
cttgaagccgtggctcgctctgccgattctgatgatgatgaagccgccgacgataatgga
gacgatgtcaacggtgatgctgacgatgttgaggaggacggaaacaacaatgaaattagt
aaacgtgagaaagaaaggctcaaagaaatggagaaattgaagaagcataagattcaggag
attttggacgcacagaatgcggctatagatgcagatatgaacaataaaggaaagggacgc
ctgaagtatttgctgcagcaaactgagttgtttgctcattttgccaaacctgatcaatct
tcatcccagaagaaagcaaagggaaggggtcggcatgcatccaaaataactgaagaggaa
gaagatgaagagtatctaaaggaggaggaagatggtttatctggagctggaaacacacgg
ttggtggcacaaccctcttgtattcagggaaagatgagggattaccaacttgctgggtta
aactggcttataagactctatgagaacggtataaatggaattcttgcagatgaaatgggt
cttggtaaaactttacaaaccatctccttactgggttacctgcacgaatttagaggaata
actggtcctcatatggtagttgctccaaagtctacacttggtaactggatgaatgaaatt
cgtcgtttttgtccagttttgcgtgctgtaaagtttcttggtaatcctgatgaaaggaag
cacatacgcgaagatttacttgttgcaggcaaatttgatgtgtgtgttactagttttgaa
atggccatcaaagagaagtcaaccttgcgtcgctttagctggcgctacataatcattgat
gaagcccaccgaattaaaaatgaaaattctcttctttcaaaaacaatgagactttacaat
accaattaccgtcttctcattactggtactcctcttcagaacaatctccatgaactctgg
tctcttctgaactttttactgccagaaatttttagctcagctgaaacctttgatgaatgg
tttcaaatttctggtgaaaatgatcagcaggaggtggttcaacaactgcacaaggttctt
cggccattccttctgcgaagactgaaatcagatgttgagaaagggttgcccccaaagaag
gagaccatactgaaggtagggatgtcccagatgcagaagcagtattatagggctttgtta
cagaaagaccttgaagttgttaatgctggtggagaaaggaaacgccttctgaatgtagcg
atgcagctgcgtaaatgctgtaatcatccatatcttttccagggagctgagcctggccca
ccatttacaactggagagcatcttattaccaatgctggtaagatggttctcttggataag
ctgcttccgaagcttaaagagcgtgattccagggttttgatattttcacagatgactaga
ttgcttgacattcttgaagactacttgatgtttcgcggctatcagtattgtcgtattgat
ggtaatactggtggggaagatcgtgatgcttccattgagacctttaacaagccagggagt
gagaaatttgtcttcttgttgtcaactagagctggaggacttgggattaatcttgctact
gcagatgttgtcatactttatgatagtgactggaatccacaagttgatttgcaagcacag
gatcgtgctcataggattggtcaaaagaaagaagttcaagtgttccgattttgcacagag
tataccattgaggaaaaagtgattgagagggcttataaaaagcttgcacttgatgcttta
gtgattcaacaaggaagattagcggagcagaaaactgttaataaagatgagctgcttcaa
atggtgagatttggtgctgaaatggtgttcagctcaaaggatagcactattacagatgaa
gacatagacagaattattgctaaaggagaagaggcaacagcagagcttgatgccaagatg
aagaaatttacagaagatgcaataaagttcaaaatggatgactctgctgaattatatgat
tttgatgatgataaggacgagaataagtttgacttcaagaagattgtcagtgataactgg
attgaaccaccaaagagagagcgaaagcgcaattactcggaatctgattactttaagcaa
acaatgcgtcaaagtggtccagcaaaaccaaaagaacctcgaattccccgcatgcctcaa
ttacacgattttcaatttttcaacacacaaagattgagtgaattgtatgaaaaagaagtg
cgcttcctcatgcaaacacatcaaaagaatcagataaaagacacaattgatgtggatgaa
cctgaagagagcggagaacctttgactgctgaagaattggaagaaaaggagagactattg
gaagagggcttttcttcttggagtagaagagacttcaatacctttattagggcttgtgag
aagtatggccgcaatgacataaaaagtattgtttccgaaatggaaggtaaaacagaggag
gaagttgaaagatacgctaaagtttttaaagagcgatacaaagagttaaatgattatgac
aggatcattaaaaatattgagaggggggaggctagaatttcccgtaaagatgagatcatg
aaagctattgggaagaaattggatcgatacaagaatccatggcttgaattgaagatccag
tatggtcagaacaaagggaagctgtacaatgaagaatgtgatcgattcatgatttgcatg
gttcacaagcttggatatgggaactgggatgagttaaaggcagcatttcgcacatcacct
ttgtttcgttttgattggtttgtgaagtctcgcacgactcaagaactcgcaaggagatgt
gataccctaattcggttggtggagaaggaaaaccaagaatatgatgagagagagagacaa
gctcggaaagagaagaagcttgccaagaacatgacaccctctaagcgtgctatggggagg
caaactgagagtaccagttcgcaaaagagacgaaagcaattgacaatggatgattatgtc
agctcaggaaagaggaggaagtag
DBGET
integrated database retrieval system
