Manihot esculenta (cassava): 110611373
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Entry
110611373 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110611373
09122 Translation
03013 Nucleocytoplasmic transport
110611373
03015 mRNA surveillance pathway
110611373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110611373
03041 Spliceosome [BR:
mesc03041
]
110611373
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110611373
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110611373
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110611373
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110611373
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
110611373
NCBI-ProteinID:
XP_021607354
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All DBs
Position
3:1356338..1362171
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVAAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIKVHKDLLKNECPHIVVGTPGRILA
LARDKELSLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaccagggacaacgatgcttacgaggaggagcttctcgactacgaggaagaa
gaagagaaagctccagattctgttgctgccaaagttaatggcgaatctgctaagaaaggc
tatgttggaatacacagttctggattcagagacttccttttgaagccggagcttctacgg
gccattgtggactccggatttgaacatccttctgaagttcagcacgagtgtatcccccaa
gccatcttgggaatggatgtcatctgccaagctaaatctgggatgggaaagactgctgtg
tttgttctgtctagtctccagcaaattgagcctacatctggccaagttattgctcttgtc
ttgtgtcacactagggagttggcttaccagatatgccatgagtttgagaggttcagtact
tacttgcctgatatcaaggttgctgtcttttatggtggtgtccatatcaaagttcacaaa
gatctattgaaaaatgaatgcccacatattgttgttgggacacctggaagaatactcgca
ttggcaagagataaggaactttcattgaagaatgtgaggcattttattcttgatgaatgt
gacaagatgcttgaatcactcgacatgaggaaagatgtgcaggagatattcaagatgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagaaatacgcccagtt
tgcaagaaatttatgcaagatcctatggaaatttacgttgatgatgaagccaagttgacc
cttcatggtcttgtacagcactacatcaaattgactgaactggagaagaaccggaagttg
aatgatctccttgatgctctggacttcaatcaagttgttatttttgtcaaaagtgtgaac
agagcagctgagcttaacaagttacttgttgagtgcaattttccctctatttgcatccat
tctggcatgtcccaagaggaaaggttgacacgctacaagggattcaaggaggggcataaa
aggattcttgtggccacagatttggttggacggggaattgatattgaacgggtaaacatt
gtcatcaactatgacatgccagactccgctgacacatatttacatagagttggtagagct
ggtagatttggaactaaagggcttgcaattacatttgtatcatctgcatcagattctgat
gttctgaatcaggtccaggagaggtttgaggtggacataaaggagcttcctgaacagatt
gacacatctacatacatgccttcttag
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