Manihot esculenta (cassava): 110611539
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Entry
110611539 CDS
T05761
Name
(RefSeq) LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
110611539
Enzymes [BR:
mesc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
110611539
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GFIT
Motif
Pfam:
CBM-like
fn3_3
CarbopepD_reg_2
CarboxypepD_reg
Y_Y_Y
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
110611539
NCBI-ProteinID:
XP_021607620
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Position
3:18756107..18773897
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AA seq
499 aa
AA seq
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MGKMHLLAGSSGPAIGNQPLAYPEAVRLINPTRILAGQVDDKYQYACENKDNKVHGWISN
DPPVGFWMITPNNEFRDAGPVKQDLTSHVGPIVLNMFGSVHYAGKDLNTEYRNGEPWKKV
FGPVYVYLNSIPPSENPKALWEDAKRQMSTEVKSWPYNFPRSEDFPSSDQRGNVIGQLVV
RDPYINEKLIDASLAYAGLAAPGAVGSWQTEVKGYQFWTQADKKGSFSIKNIRAGKYSLY
AFVPGFLGDYEYNVDVIIQPGSKIKLGVLTYDPPRNGPTLWKIGIPDRTASEFYVPDANP
TLVNKLYIDSPANKFRQYGLWERYTDLYPKNDLIYTVGVSNYAKDWFFAHVNRKVGNMPY
KATTWHIIFELKSVMQSGSYTLQIXLASATNSELQVRFNNANAKPPLFTIRLIGKDNAIA
RYGIHGLYWFYSIQLPVSQLLQGKNIIYLTQTRNGSPFSGIMYDYIRLEAPPSSPSNPSQ
HASNLSHSSISQHNKHIGA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagatgcatttgcttgctgggtctagcgggcctgctatcggtaatcaacctcta
gcctatcctgaagctgttcgtttaataaatccaacacggatactagctggacaggtggat
gataaataccagtacgcttgtgagaacaaagacaacaaggtgcatgggtggatatcaaat
gacccaccagttggattttggatgatcacacctaataatgaatttcgcgatgctggcccc
gtcaagcaagacctaacctctcatgtggggcctattgttctcaatatgtttggtagtgtt
cattatgctgggaaggacttaaatacagagtatcgaaatggagagccatggaagaaagtt
tttggccctgtttacgtctatcttaattctattccgccttctgaaaatcccaaagccctt
tgggaagatgctaaaagacaaatgtcaactgaagttaaaagctggccatataattttcct
cgatctgaagatttcccttcttctgatcaacggggaaatgtcataggtcaattagtagtt
cgtgacccgtacatcaatgaaaaattgattgatgcaagtttagcttatgcgggattagca
gcaccaggtgctgtgggctcatggcaaacagaagtaaagggttaccaattttggactcaa
gctgacaagaaaggaagtttctcaattaaaaatatcagagctgggaaatatagtttatat
gcatttgttcctggttttcttggagattacgagtataatgttgatgtcattattcaacca
ggatctaagatcaaattgggtgtacttacatatgatcctccaagaaatggtccaactctt
tggaaaattggcattcctgatcgtactgcttctgaattctatgtaccagacgcaaaccca
acactcgtcaacaaattgtatattgatagcccagcaaacaaatttagacaatatggattg
tgggaaagatatactgatctataccctaagaatgatctcatatataccgttggtgttagt
aattatgctaaagattggttcttcgcccatgttaacagaaaggttggaaatatgccatat
aaggcaactacatggcatatcatatttgaacttaaaagtgtaatgcaaagtggaagttat
actttgcaaatangccttgcatcagctactaattctgaacttcaggtgaggttcaacaat
gccaatgccaaaccacctcttttcacaataaggctaataggcaaggataatgctattgca
agatacggaattcacggtttatattggttctatagcattcaattaccagtttctcaactt
ctccaaggaaagaatataatttatcttactcagactagaaatggaagcccttttagtggt
attatgtatgattatattcgtttagaagcaccgccttccagtccctccaatccttcccaa
catgcatccaacctctctcactcatccatatctcaacacaacaagcatataggagcttaa
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