Manihot esculenta (cassava): 110611760
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Entry
110611760 CDS
T05761
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110611760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110611760
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110611760
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110611760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110611760
NCBI-ProteinID:
XP_021607909
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All DBs
Position
3:complement(27028156..27033278)
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AA seq
717 aa
AA seq
DB search
MTRRWPLRAFSRMLARAYTSYSSSSTFPLKHVTKSNFEYALSELKSHVGAADFVAIDLEM
TGVTSAPWRESFEFDRFDVRYLKAKDSAEKFAIVQFGVCPFRWDDHRHSFIAHPHNFFIF
PRQELAAGGPSNEFLCQTTSMDFLARYQFDFNTCIHEGVSYLSRGQEEEALRRLNLRYEN
NGLDNLNEVRDVPVASVTDVLFCERMKNRLHEWRDWLLRNGNGGSQFQWASNHSTQQVQT
IFYKLRPALCLNGFTSHQLKLIQLVTRKHFKDLSYVRFGGETSCSQQLVVYTDSKNDRDL
LMKEVKDNYLKEAEMKIRAAIGFRHVIDLLSSAQKLIVGHNCFLDIAHIYSKFLGPLPLT
AEEFVSSINTYFPHIVDTKVLLNSNNVRLPRMKKSNTSLSSAFSLLCPQIAVNSNKNSDL
AFRPCVNVEVQVDDTRSSNWSSGVKHEAGYDAFMTGCVFAQACKNIGIDFKSHSSSENLT
HNDKLQKHINLLYLSWISGDIIDLSSGNMIAEPSGSNNFRIRRPKVLFENIVLIWRFPPR
LNASKLRECISKVFGPNSVTSVYLVDETAIFLQFSKAELVSEFLVLKESLERSNDAISVL
HPLSELLQGGNTCAAGYETYKEICSSPISKVLFAEQADAIGIRWKTKLVGSEPEAQSQEP
ESFSKENAATTAPFLSKKIEVGNKQRVIDDLLSGRSRCDEVIDSFLTAEVKQIGATN
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaccagacgttggcccctgagggcattctcacgtatgctagcacgtgcatacacctcc
tattcctcttcttcgacgttccctctgaagcatgtgaccaaatcaaacttcgagtacgca
ctctccgagctgaaaagccatgtcggtgctgctgatttcgtcgccatcgatcttgagatg
accggcgtcaccagcgctccatggcgcgagtccttcgaattcgaccgattcgatgttcgg
tacctcaaggccaaagattccgccgagaagttcgccatcgttcagttcggcgtctgtcct
ttccgctgggatgaccaccgccactccttcattgctcatccgcacaatttcttcatattt
cctcgccaagagctagcagcaggtggcccctccaatgagtttctgtgccagacgacgtcc
atggatttcttagctagatatcagttcgatttcaatacctgcatacacgaaggagtttct
tatttatctagagggcaggaagaggaagcattaagacgcttgaacttgcgatacgagaat
aatgggttagataatttgaatgaagtcagagacgtgccagtggccagtgtgactgacgtt
cttttctgtgaaagaatgaagaacagactgcatgagtggcgcgattggttattgaggaat
gggaatggggggtctcagtttcagtgggcttcaaatcactccacacaacaggtccaaacc
atattctacaagttgcggccggctctttgtctgaatggtttcacttctcatcagctcaag
ttgattcagttggtcactagaaagcattttaaagatctttcttatgttcgtttcggtggt
gaaacttcttgttcgcagcagctagtcgtatacacggactccaagaatgacagggacttg
cttatgaaagaagtgaaggataattaccttaaagaggcagagatgaaaatcagagctgca
attgggtttcgccatgttattgaccttctttcttctgcacaaaagttgattgtgggtcac
aattgctttttggatattgcacatatatacagcaaattcttaggtcctcttcctctaact
gctgaagaatttgtttcctctattaacacatactttccgcacattgttgataccaaagta
ctattgaattccaataacgtgcgccttccaaggatgaagaaatcaaacacatcactctct
tcggcgttttctttactctgtccgcaaattgctgtgaattccaataagaattctgatttg
gcatttcgtccgtgtgtgaatgtggaggttcaagtggatgatacaaggtcctccaactgg
agttctggagtgaaacatgaagctggatatgatgcttttatgacaggttgtgtctttgcc
caggcatgcaaaaatattggcattgattttaagtcccattcatcctctgagaatctgacc
cataatgacaaactccagaagcacatcaaccttctatatctcagttggatttctggggac
attattgatctaagtagtgggaatatgattgcagagccttcaggatctaataacttcaga
ataagacgtcctaaggttttgtttgagaatattgttttaatctggcgatttccacctagg
ctcaacgcaagcaagttgagagaatgcatttctaaagtctttggtccaaactctgttaca
tccgtctatcttgtggatgaaactgctatttttcttcagttcagcaaggcagagttggta
tctgaatttctagttttgaaagaatccttggagaggagtaatgatgccatttctgttttg
catcctctatcagaactgctgcaaggtggaaatacttgtgccgctggttatgaaacttat
aaggagatatgcagttcacctatctccaaagttctctttgcagagcaggcagatgcaatt
ggtatcagatggaagaccaagttggtaggatccgaaccagaggcacaatcccaggagcca
gaaagtttttctaaagaaaatgctgcgactaccgcaccatttcttagcaagaaaatcgag
gtaggcaataagcaacgtgtaatagatgatttgctgagtggccgatccagatgtgatgag
gttatcgattcctttttaactgcggaagtcaaacagattggagctactaattag
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