Manihot esculenta (cassava): 110611807
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Entry
110611807 CDS
T05761
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
mesc03440
Homologous recombination
mesc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110611807
03420 Nucleotide excision repair
110611807
03430 Mismatch repair
110611807
03440 Homologous recombination
110611807
03460 Fanconi anemia pathway
110611807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110611807
03032 DNA replication proteins [BR:
mesc03032
]
110611807
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110611807
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110611807
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110611807
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110611807
MMR (mismatch excision repair)
110611807
DSBR (double strand breaks repair)
HR (homologous recombination)
110611807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Fer4_9
Motif
Other DBs
NCBI-GeneID:
110611807
NCBI-ProteinID:
XP_021607988
LinkDB
All DBs
Position
3:complement(3383172..3386574)
Genome browser
AA seq
668 aa
AA seq
DB search
MPVNLTPNAIAIINGGDVNSKPLVQVVDIKQIGSAQERYRLLISDSTSTQHAMLATQLND
RVKDGSVKKGSVIQLIDYICSEVQKRKIIVVLNMETIIPDCEIIGNPKLFTDMTAQKALP
NGNSIQSAGVAYNNSSAQSYGNNMQSFQPPLSNLGYTVHSSRPPLTSQNHCNNMQSFRST
LGAQNHGNNAQSFQPTVQPPYRPPPSYRNHGAIMKNEAPARIIPITALNPYQGRWAIKAR
VTAKGDLRRYNNARGDGKVFSFDLLDSSGGEIRVTCFNAVVDRFFDVIEVGRVYLISKGS
LKPAQKNFNHLNNEWEIFLEATSTVDLCPDEDGSIPQQQFAFKPISEIENAENNAILDVI
GIVMSVNPSVPILRKNGMETQRRILNLKDSSGRNVELTLWGDFCNKEGQKLQEIVDSGVF
PVLAVKAGKVSDFSGKSLGTISSTQLIINPDIPEAHGLKEWFDRGGHNAASLSISRDIMP
GGSKNEIRKTVSQIKNEGLGRSDRPDWVTVSARITFVKTDTFCYTACPLMIGDRKCNKKV
IRSGNSRWQCDRCNQELDECDYRYLLQVQIQDHTGLTWVTAFQEAGEEILGYPARELYLM
KYELQDDTRFADIVRGRLFHQYLFKLKIKEEMYGDEQRVNMTVVKADKVNYSSESRYLLD
FISKCPRY
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaatttgacgccaaacgctatagcgataataaacggcggcgatgtgaattcg
aagccattggtgcaggttgttgatataaagcagataggtagcgcacaagagaggtatcgc
ctcctcatatcagattctacctctactcagcatgcaatgcttgccactcagctcaacgac
cgagtcaaggacggctccgtcaagaaaggatctgttattcaattgatcgattacatttgc
agcgaagttcaaaagcgcaagattattgttgtgctgaacatggagactataataccagac
tgtgaaataattggaaatccaaaattgtttactgatatgactgctcagaaggcattacct
aatggcaactcaatacagtcagcaggggttgcttataacaattctagtgcccaaagttat
ggcaataatatgcagagtttccagcctcctttgagtaatctgggctatactgtgcatagt
tcaaggcccccacttacttctcaaaatcattgcaataatatgcaaagtttccgctccact
ttgggtgcccaaaatcatggtaacaatgcacagagcttccaaccaactgttcaacctccg
tatagaccacctccaagttatagaaatcatggtgctatcatgaagaatgaggcaccagca
cgcataatccccattactgctctgaatccttatcaggggcgatgggctatcaaggctagg
gtaactgctaaaggggatctccgtcgctacaataatgcccggggagatgggaaggtcttc
tcctttgacctccttgactctagtggaggtgaaattcgagtgacgtgcttcaatgctgtt
gttgatcgcttttttgatgttattgaggtaggtagagtctatttgatttcaaagggtagc
ttaaaacctgcacagaagaatttcaaccacttgaataatgagtgggagatatttttggag
gcaacttcaactgtggatctttgtcctgatgaagatggttctataccacaacagcagttc
gccttcaaacccatcagtgaaattgagaatgcagaaaataatgccatacttgacgtcatt
ggtattgtaatgtctgttaacccttcagttcctatattgagaaagaatggaatggaaact
caaagaagaattctgaatctgaaggatagttctggcaggaatgttgagctaaccctttgg
ggggatttctgcaataaggaaggtcaaaagctacaagagattgttgactctggggttttt
ccagttttagctgtcaaagcaggcaaggttagtgacttcagtgggaaatccttagggaca
atttcttctactcagctcattataaatccagatattcctgaggctcatggcctgaaagag
tggtttgatcgaggggggcacaatgctgcttctttgtccatttccagggacattatgcca
ggaggatctaagaatgagatacgtaaaacagtttctcagatcaagaatgaaggtcttgga
agatcagataggccagactgggtcacagtgagtgcaagaataacttttgtcaaaactgat
acgttctgttatacagcttgcccattgatgattggtgatagaaaatgtaacaagaaagtg
ataagatcaggaaactcaagatggcaatgtgacagatgcaatcaagaattggatgagtgt
gattataggtatcttcttcaagttcagattcaagaccatacaggattgacttgggtaaca
gcttttcaggaggcgggagaagaaatattaggttaccctgcaagggaattgtacttgatg
aaatatgaattgcaggatgataccagattcgcagatatagttcggggcagattattccac
cagtatctattcaagcttaagatcaaagaggaaatgtacggtgatgaacaaagggtgaat
atgactgttgttaaggcagataaggtgaactattcttcagagagtagatatcttcttgat
tttatttcaaaatgtcctagatactga
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