Manihot esculenta (cassava): 110611873
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Entry
110611873 CDS
T05761
Name
(RefSeq) RNA-binding protein 208 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110611873
03041 Spliceosome [BR:
mesc03041
]
110611873
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
110611873
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110611873
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_5
RRM_8
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
110611873
NCBI-ProteinID:
XP_021608098
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Position
3:143031..165182
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AA seq
418 aa
AA seq
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MQQALLQQHHMYHPGVLAAAMSQMEPIPSGNLPPGFDSSTCRSVYVGNIHVNVTEKLLAE
VFQTAGPLAGCKLIRKDKSSYGFVDYHDRSSAALAIMTLHGRQLYGQALKVNWAYANSQR
EDTSGHFHIFVGDLSPEVTDATLFACFSVYDSCSDARVMWDHKNGRTKGYGFVSFRNQQD
AQSAINDLTGKWLGNRQIRCNWATKGSGSSEDKQISDNQNAVVLTIGSSEGAQENTNEDA
PENNHAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYSTHEEAAS
AIQMANGKIIRGKPMKCSWGSKPTPPGTASNPLPPPTQPYQMLPSGINQGYSATDLLVYQ
RQLALSQATASGLSGQALVQLTGQHGLAASMGLNSGGSHGLYDGYPNSSSAQQLMYYR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagctttgcttcaacaacatcacatgtaccacccaggtgtcctcgctgctgct
atgtctcagatggagccaatccccagcggaaatcttcctcctggctttgattcatctaca
tgccgcagtgtttatgtaggaaatattcatgtaaatgtcactgagaaacttcttgctgaa
gttttccagactgctggtcctcttgcaggatgcaagctcatcagaaaggataagtcatca
tatggttttgtggactaccatgatcgatcatctgcagcgcttgcaattatgacacttcat
ggacggcaactttatggtcaggcacttaaggtgaattgggcatatgcaaatagccaaagg
gaagatacatcaggccacttccatatatttgttggtgatttgagtccagaggttactgat
gcaactttatttgcatgcttctcagtctatgatagttgctctgatgcaagggtgatgtgg
gatcataaaaatggccgcacgaaaggatatggctttgtttccttccgtaatcagcaggat
gcacagagtgctatcaatgacttgactggtaaatggctagggaataggcaaataagatgc
aactgggcaactaaaggctctgggtccagtgaagacaagcaaattagtgataaccaaaat
gcagttgtacttaccattggatcttcagaaggagctcaagaaaatactaatgaggatgct
cctgaaaacaatcacgcatatactactgtctatgttggtaatctttcccatgaggtaact
caagctgaacttcactgtcaatttcatgctcttggggcgggggtaattgaagaggttcgt
gttcagagagataaaggtttcggatttgtaagatatagtactcatgaagaagcagcctct
gccattcagatggccaacgggaaaataattcgtgggaaacccatgaagtgttcatggggt
agtaagccaacaccccctgggacagcttcaaatcctttaccgcctccgactcaaccttat
caaatgcttccatctggaattaaccaaggctattctgcgactgatttgttggtctaccag
cgtcaacttgccctgagccaagctactgcatcgggcttatctggtcaagctctagtacag
ctgactggacaacatggtcttgctgcttctatgggtttgaactctggtgggtcccatggc
ctgtatgatggatatcctaacagttcttcggctcaacagctcatgtattatcgttga
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