Manihot esculenta (cassava): 110611875
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Entry
110611875 CDS
T05761
Name
(RefSeq) tRNA pseudouridine synthase A 1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mesc03016
]
110611875
Enzymes [BR:
mesc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
110611875
Transfer RNA biogenesis [BR:
mesc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
110611875
Prokaryotic type
110611875
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
HutD
Motif
Other DBs
NCBI-GeneID:
110611875
NCBI-ProteinID:
XP_021608103
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All DBs
Position
3:32852239..32854644
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AA seq
334 aa
AA seq
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MITFGILSLSSSLHPSLSVSSSNNILDVGNGNGSGCTDEAIQTAKNSTLDGFKWRLVIAY
DGTRYAGWQFQQSPPTIQCSMEKALVRVTKLERKDLLLVGASRTDTGVHAWGQVAHFVTP
FNYDCLDRIHAALNGLLPPDIRVREISPAVSEFHARFSAKSKVYQYKIYNDTIMDPFHRH
YAYHIAYKLNVDSMRQAAKHFIGKHDFSAFVNASRNDRVPDPVKTIFRLDVIEMGALLQL
EVEGTGFLYRQVRNMVALLIQIGKEAMPPEIVPMILATRDRKELAKYTLPAPPHGLSLVA
VKYNEDHLRLPPDGSPRISVGRHRSVTKCKLPLY
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgataacttttgggattttgagcctatcctcttctctacatccaagtttgagtgtttct
tcatccaataatatcttggatgtgggaaatggaaatggaagtggttgcaccgatgaggct
atacagactgccaaaaactcaacccttgatgggtttaaatggcgtttggttatagcatac
gatggcactcgttacgcaggttggcaatttcagcaatcccctccaactatacagtgcagt
atggaaaaagccttggtgcgagtgacaaagctagaaaggaaggatcttcttttagttggt
gcaagtaggacggatactggagttcatgcctggggccaggtggcacattttgttacacct
ttcaattatgactgcttggatagaattcatgcagccctcaacggtctccttcctccagat
atccgagtaagagaaattagccctgcagtctctgaattccatgctcgattttcggcaaag
agcaaggtctatcaatacaagatatataatgacaccattatggatccatttcatcgccac
tatgcataccacattgcttataagctcaatgttgattccatgagacaagctgcaaaacat
tttataggaaagcatgatttctctgcttttgtcaatgcatctcgcaatgatcgagtgcct
gatccagtgaagacaatttttcgtcttgatgtcattgaaatgggagctctactacagcta
gaagttgaaggcacgggcttcttgtatagacaagtgcggaacatggttgctttgctaatt
caaattgggaaggaagcaatgcctcctgaaattgtccctatgattttggcaactcgtgat
cgcaaggagctggctaaatacaccttgcctgccccacctcatgggctgagccttgtagct
gtcaagtataacgaagatcaccttcggcttcccccagatggaagccccagaattagcgtt
ggtaggcataggagcgtgacgaaatgtaagcttcctttgtattaa
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