Manihot esculenta (cassava): 110612158
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Entry
110612158 CDS
T05761
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110612158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612158
03110 Chaperones and folding catalysts [BR:
mesc03110
]
110612158
03029 Mitochondrial biogenesis [BR:
mesc03029
]
110612158
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110612158
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
110612158
Messenger RNA biogenesis [BR:
mesc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
110612158
Chaperones and folding catalysts [BR:
mesc03110
]
Heat shock proteins
HSP60 / Chaperonin
110612158
Mitochondrial biogenesis [BR:
mesc03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
110612158
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110612158
Exosomal proteins of other body fluids (saliva and urine)
110612158
Exosomal proteins of breast cancer cells
110612158
Exosomal proteins of colorectal cancer cells
110612158
Exosomal proteins of bladder cancer cells
110612158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CO_dh
Motif
Other DBs
NCBI-GeneID:
110612158
NCBI-ProteinID:
XP_021608550
LinkDB
All DBs
Position
3:complement(28261595..28266572)
Genome browser
AA seq
574 aa
AA seq
DB search
MYRFASSLASKARIARNSTHQIGSRLNWSRNYAAKDIKFGVEARALMLKGVEELADAVKV
TMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGT
TCATVLTRAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLDNELEVVEGMKLDRGYISPYFITNQK
NQKCELEDPLILIHEKKISSIHAMVKVLELALKRQRPLLIVSEDVESEALATLILNKLRA
GIKVCAIKAPGFGENRKAGLQDLAVLTGGEVITEELGLNLEKVDLDMLGSCKKITVSKDD
TIILDGAGDKKAIEERCEQIRSAIELSTSNYDKEKLQERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGIVAGGGVALLYATKELAELQTDNFDQKIGVQIIQNALKT
PVHTIASNAGVEGAVVIGKLLEQDDHNLGYDAAKGEYVDMVKAGIVDPLKVIRTALIDAA
SVSSLMTTTEAIVSELPKDEKDAPGMAPGMGMDY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttcgcctctagcctcgcttctaaggctcggatcgctaggaacagcacgcat
cagattggaagtagactaaactggagcagaaactatgcggctaaagacatcaaatttggt
gtagaagcccgtgccttgatgcttaagggtgttgaagagcttgctgatgctgtaaaagtc
accatgggtcctaaggggcggaacgtagttatcgaacaaagctttggagcccccaaagtg
acaaaagatggggtgactgttgcaaagagcattgaattcaaggataaagtcaagaatatt
ggtgctagccttgtaaagcaggttgcaaatgccaccaatgatgttgctggagatgggacc
acttgtgccactgttcttactcgagcaatattcacagagggatgcaagtctgttgcagca
ggaatgaatgcaatggacctgagacgaggcatcagcatggctgttgatgctgttgttacc
aatttgaagagcagagcacggatgatcagcacatctgaagaaatagcacaagttggtaca
atatctgcaaatggagagagagaaattggtgagttaattgcaaaggccatggagaaggtc
ggcaaagagggagttattacaatccaagatgggaagacactagataatgagctggaagtt
gttgaaggaatgaagctggacaggggctacatatccccttatttcatcaccaaccagaaa
aaccaaaaatgtgaattagaagatcctctcattttgatccatgagaagaaaatctctagc
atacatgctatggtgaaagtattagagttagctttgaagagacaaaggcctttgttaatt
gtttctgaagacgtggaaagtgaggcattagcaacccttattttaaacaagcttcgtgct
ggaataaaggtttgcgccataaaagctcctggttttggagagaacaggaaggctgggtta
caggatcttgctgttctcacagggggtgaggtgataaccgaagaacttggcctcaatctt
gaaaaggtggatttagatatgcttggaagttgcaaaaagattacggtgtcaaaggatgat
acaattattcttgatggcgctggtgacaagaaagccattgaggaaagatgcgaacagata
aggtctgcgatagagttgagcacttcaaactatgacaaagagaaattgcaagagagactg
gcaaagctttctggaggtgttgctgttcttaagattggaggagctagtgaagctgaagtt
ggtgagaagaaagacagggttacagatgccttaaatgctacaaaggcagctgtagaagag
ggtattgtggcaggtggtggtgttgctcttctttatgccacaaaagagttggctgagtta
cagactgacaacttcgaccaaaagattggtgtccaaatcattcagaatgctctaaagact
ccagtacatacaatcgcgagtaatgcaggagtggaaggagctgttgtgattggcaagcta
ttagagcaggatgaccataaccttggttatgatgctgccaaaggtgaatacgttgatatg
gtgaaagcagggattgttgatcctttgaaagtaattagaactgctttaattgatgcagca
agtgtgtcatcattgatgacaacaactgaggcaattgtatctgaacttccaaaggatgag
aaggacgctccaggaatggcaccgggcatgggcatggattattga
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