Manihot esculenta (cassava): 110612195
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Entry
110612195 CDS
T05761
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
110612195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110612195
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110612195
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Preseq_ALAS
Motif
Other DBs
NCBI-GeneID:
110612195
NCBI-ProteinID:
XP_021608597
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Position
1:38408770..38412765
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AA seq
584 aa
AA seq
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MLRMARSFPEEVLEHVFSFIHSDKDRNAISMVCKSWYDIERWCRRRIFVGNCYAVSPPMV
IRRFPELRSIELKGKPHFADFNLVPDGWGGYVYPWIAAIATAYPWLEEISLKRMVVTDET
LELIAKSFKNFKVLVLSSCEGFSTHGLAAIASNCRNLRELDLRESEVDDPSGHWLSHFPD
SFTSLVSLNISCLGSEVSLSALEHLVGRCPNLRTLRLNRSVPLDRLANILRRAPQLVELG
TGTYSAELRPDVFSSLAGAFSGCKELKSLSGFWDVVPGYLPAIYPVCSSLTSLNLSYATI
QSPDLVKLVSPCQSLQRLWVLDYIEDIGLEAIAAFCKDLQELRVFPSDPFALEPNVSLTE
HGLVSVSEGCPKLHSVLYFCRQMTNDALVTIARNCPKMTRFRLCIIEPRTPDYITLQPLD
DGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTHAKKLEMLSIAFAGDSDLGLHHVLYGCE
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKMPSLNVEVIDER
GPPDSRPESCPVEKLYVYRTVAGPRFDMPGFVWTMDEDSALRFS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaatggcgaggtcgttccctgaggaggtgctggagcacgtgttctcattcata
cacagcgacaaggaccggaacgcgatttcgatggtgtgcaagtcctggtacgatatagag
aggtggtgcaggaggaggattttcgtcggaaactgttatgcggttagtccgccaatggtg
attcggagatttcccgagttgagatcgattgagctcaaagggaagcctcacttcgctgac
ttcaatctggtccccgacggttggggtggttatgtttacccgtggatcgcggccatagct
acagcatacccctggctcgaggagatcagtttgaagagaatggtggttaccgatgagact
ttagagctgattgctaagtcctttaagaatttcaaggttttggtgctctcttcctgtgag
ggtttctctactcatggacttgctgccattgcttccaattgcaggaatctgagggagctg
gatttgcgggagagtgaggtggatgatcctagtgggcattggttgagccactttcctgac
tcattcacgtcactggtgtcccttaacatttcctgcttagggtctgaggtgagtttatca
gccctggagcacctggtgggtcggtgccccaatttgaggactcttcggctcaaccgttca
gtgcctcttgacaggcttgctaacatactccgcagggcaccccagctggtagagttgggc
acaggcacctactcagctgagctgcggcctgatgttttctcaagcctagctggggccttt
tctgggtgcaaggaactaaaaagtttatctgggttttgggatgtggtcccaggttacctt
ccagcgatttaccctgtttgttcaagcctaacatcattgaacttgagctatgccactatc
caaagccctgatcttgttaagcttgttagtccgtgtcaaagtttgcagcgcttgtgggta
ctggattacattgaggatattggacttgaagctattgcagcattttgcaaggacctgcaa
gagttgagggtgttcccatctgatccatttgccttggaaccaaacgtatccttgacagaa
cacggcctcgtctctgtttctgagggctgtcctaagctccattctgttttgtacttttgc
cgccaaatgactaacgatgccttggtaacaattgccaggaactgtccaaaaatgactcgc
tttcgactttgtattattgaaccacgaacccctgattatataacccttcagccattggat
gatggttttggagctattgttgaacattgcaaggacctccagcgcctttctctgtcaggt
ctcctcactgatcgtgtgtttgaatatattggaactcatgccaaaaagctagagatgcta
tctattgcttttgctggagatagtgatctgggactccaccatgtgctatatgggtgtgaa
aaccttcgcaaactagagattcgagattgcccctttggggacaaggctcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctcagtgagttttggt
gcatgtaagctactaggtcagaagatgcctagcctcaatgttgaagttattgatgagagg
ggacctccagattcaagaccagaaagttgtcctgtagagaaactttacgtttataggact
gttgctgggcctcgatttgacatgcctggtttcgtttggacaatggatgaagattctgca
ttgaggttttcttga
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