Manihot esculenta (cassava): 110612264
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Entry
110612264 CDS
T05761
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER
KO
K21444
poly(rC)-binding protein 3/4
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612264
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
110612264
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
MOEP19
Motif
Other DBs
NCBI-GeneID:
110612264
NCBI-ProteinID:
XP_021608693
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Position
3:complement(290349..294243)
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AA seq
449 aa
AA seq
DB search
MSSPPTAPVNSGPQELDELGAPQSDGAQLQQLQPQTQPKWPGWPGDNVFRLIVPVVKVGS
IIGRKGELIKKMCDETRARIRILEGPLGIPDRVVLISGKEEPEAALSPAMDAVLRVFKRV
SGLSDGEADSMGAAVAGAAFCSIRLLVASSQAINLIGKQGSTIKSIQENTGSVVRVLAEE
EAPSYVTSEERIVEIHGEALKVLKALEAVIAHLRKFLVDHSVVPVFEKTYNATISQEHTA
DSRADKPQLSLHSAPAPQIGIGSDYSLSLKRDPSIYDRETLFEPKIPQSGLSLYGQDSAL
GGLRSSGLSRAAAPMVTQMTQTMQVPLSYAEDIIGVGGSNIAYIRRTSGAILTIKESRVL
PDEITVEIKGSTSQVQMAQQLIQEFISNRKEPTPSMYGKMDAGFSSYSQVADTSYPSSSF
ASHLGGYGSSSSLGGYGSPTGGGYSSYRY
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgccgcctactgctcccgtcaactctggcccgcaggaactcgacgagttaggc
gcaccacaatcagatggagcgcagctccagcaattacaacctcaaacacagccaaagtgg
ccaggttggcccggagacaacgtgttcaggctcattgtgcctgtggtcaaagtaggaagc
atcattgggcgtaagggagagctcatcaagaagatgtgcgatgaaacccgtgctcgcatt
cgcattctcgaaggccccctcggcatccctgatcgcgttgttttgatatctggaaaagaa
gaaccagaagcagcattgtcccctgcgatggatgcagttctaagagtgttcaaacgtgtt
agtggtctatctgatggtgaggctgacagtatgggtgcagctgttgctggcgctgcattt
tgctccatacgtttactggttgcttcttcacaggcgattaacttaattgggaaacaggga
tctacaatcaaatcaatacaggaaaataccggttctgttgtacgtgttttagcagaagag
gaagcgccttcatatgttacttcagaagaaagaattgtcgaaatacatggtgaagctcta
aaggttttaaaagcattagaagcagtaatagcacacctgagaaagttcttggttgatcat
agtgtcgtccctgtatttgagaaaacgtacaatgcaacaatttcccaggaacacactgct
gattccagggctgacaaacctcagctctcactccattcagctcctgctcctcagattggg
atcggttctgattattccctgtccttgaagagggatccttcaatatatgatcgtgaaacc
ctttttgaaccaaaaatccctcaatctggactgtcactttatggccaggattcggcactt
ggcggattacgctcatcaggactcagtcgtgctgctgctcctatggttacccagatgaca
caaacaatgcaagtacctctttcgtatgctgaggacatcattggggttggtggatcaaat
attgcttacattcgtcgtactagtggagctattcttacaataaaagagagtagagttttg
cctgatgagattactgtggaaattaaaggcagcacttctcaggttcagatggctcaacag
cttattcaggagttcattagcaatcggaaggaaccgacaccaagtatgtatgggaagatg
gacgcaggattcagttcgtattcgcaagtagcggacaccagctacccttcatcttctttt
gcctcacatttaggagggtatggatcttcttcaagcttaggaggttatggatcccccact
gggggaggttatagcagctacagatattga
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