Manihot esculenta (cassava): 110612563
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Entry
110612563 CDS
T05761
Name
(RefSeq) serine/arginine-rich-splicing factor SR34 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110612563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110612563
Spliceosome [BR:
mesc03041
]
Common components
Common spliceosomal components
SR proteins
110612563
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
110612563
NCBI-ProteinID:
XP_021609031
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All DBs
Position
1:complement(38717620..38724029)
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AA seq
300 aa
AA seq
DB search
MVSVKMSSRASRTLYVGNLPGDIREREVEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEDA
RDAEDAIRGRDGYDFDGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGVSRRSEYRVLITG
LPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKSAIKKLDDSEFRNAF
SRAYVRVKEYDSKRDLSKSPSRSRSHSRGRGDSRSRGRSSSRSRSPTKSPKTKSSRRSPV
RSRSRSRSASRSHSGSKRRSLSRSRSRSRSPLPSRQKNTSKSPKTKSVSRSPSRSKSLSR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggtttcagtgaaaatgagtagccgcgctagcaggacactctatgttgggaatctgcct
ggcgatattcgtgagagagaagtggaggatttattctacaagtatggacctgtagcacac
atcgatctcaagatcccaccaaggccccctggttatgcatttgttgagtttgaagacgct
cgagatgcagaagatgcaattcgcggtcgtgatggctatgattttgatgggcatcgtttg
cgggtagagcttgcacatggtgggcgtggacattcatcttcagatcgccacagtagttac
agtggtgggcgtggaagaggagtgtccaggcgctctgagtatcgtgttttgatcactggg
ttgccctcatctgcttcatggcaagaccttaaggatcacatgcgacgtgcaggtgatgtc
tgtttctctcaagtgtttcgtgatggtagtggtaccacagggattgtggattacacaaac
tacgacgacatgaagtcagcaatcaagaaacttgatgactctgagtttcggaatgcgttt
tcccgagcatatgtccgagtgaaggaatacgattccaagcgggacctctctaaaagtccc
agtcgtagccgatctcattcaagaggccgtggtgacagccgcagccgtggcagaagttct
agccggagcaggagccctaccaaatctcctaaaaccaaatcgtctcgccgctcgcctgtt
aggtcaagatcaagatctagatctgcttctcggtctcactctgggtcaaaacgccgttct
ttgtcaagatcgcgttcaagatcaagatctccacttccttctcgtcagaaaaacacaagt
aagagtccaaaaacaaagagtgtcagcagaagcccaagcaggagcaagagcttatcccgg
tga
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