Manihot esculenta (cassava): 110612741
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Entry
110612741 CDS
T05761
Name
(RefSeq) uncharacterized protein LOC110612741 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110612741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110612741
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612741
04121 Ubiquitin system [BR:
mesc04121
]
110612741
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110612741
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110612741
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110612741
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110612741
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110612741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
zf-RING_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
110612741
NCBI-ProteinID:
XP_021609209
LinkDB
All DBs
Position
4:3157913..3167706
Genome browser
AA seq
1040 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRVPY
DKEKIVGMAASCERLVAEINVERKKSQKAKTKPSEGRKQLSSVRVIQRNLVYIVGLPLNM
ADEDLLQRRDYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHG
FVLDGRSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQ
QITGATNNMLRRSGSMLPPPMDDYSSNSSAAVAKPIVKNTSNNTISISKGSPPNGSSGRS
IALPAAASWGMRAGSQPQTAANSASSNGPNKPKQDVVNGTLGLSTTVASTNQASTLHSDV
GKRATWNEDGQATSGKGKQDPLKYVKPNVQDDPVIYVKPNVEDFLANMPDKPSTTDGAVA
ETSSNHSSSPPAKHNDWGSPLLSNGTDSFLHVVPSSGHEQLGISSTDKESIKTDNNFRSQ
LSGLMRTSSPLTDHSVTKLPLSPSSQGLQQSYPDQYREPLSSPGTEKIYCPREQKPDWRT
DPQIQTVTNNVSEVEEDIISFDNQRLKDPEVVTRTTCMPNSANSLHISNNSRSHLQHNDL
FGAANLNSDPLFMDNRFVDNTLMHASSNTVMSNGYHEKLLGSAAGLDRNIEHSFSLPNEG
EAGQLIENFPGDATSLDVGESSIISNILSLDLDGWDDPLTSPQNLAKLLGETDKQPSSLK
MSGSWKVQNNNQSRFSFARQEETRNQFVDVDPSFSVFGKLTKNLSVNQNFSEKRKLYLDK
AGMSNGFSTCTFEESENFTSGPSVFSSNKPSAVSRAQISAPPGFSTPNRLPPPGFSSHER
IDHLFDSLSGSHLLDSSSMLRNSYQPPSTGNINSSGDIEFMDPAILAVGKGRLQGGLSNP
GLDMRPSFPQQLSAFENEARLQLLMQRSLSPHQNLRYTEIGDSFSSLTDSYGISSRLVDQ
SQMSNLSPFMQMSLQHSRNGLVSNGHWDGWNEVQGGNNLGVAELLRNERLGLNKFYAAGY
EDSKFRMPSSGDLYNRTFEM
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaaggagaaaagacctgcccactttgcgcagaggagatggacttgactgat
cagcaattgaagccttgtaaatgtggttacgagatatgcgtttggtgttggcatcacata
atggacatggcagagaaggatgatacggaggggcggtgcccagcatgtagggttccttat
gacaaggagaagatagtagggatggcggctagctgtgaaagattggtggctgaaattaat
gttgagcgtaagaagtcacagaaagcaaagacaaaaccgtctgaaggaagaaagcaactc
agcagtgtacgggtgatccagcgaaaccttgtgtacatagttgggttacctcttaatatg
gcagatgaagatcttctccagcgcagagactattttggccagtatgggaaggttctgaaa
gtgtccatgtctcgaacggcagctggtgtcattcaacagtttccaaacaatacttgtagt
gtatatataacatactcaaaggaggaagaagcaattcgttgtattcaatctgtacatgga
tttgtcctggatggtagatctttgaaggcatgctttgggaccacaaaatactgtcatgca
tggctgagaaacgtgccctgcaccaacccagattgtctatacttgcatgagataggttct
caagaagacagttttacgaaagatgagataatatcggcatacaccaggagtagggttcaa
caaattactggtgcaacaaacaatatgctgcggcgttcagggagtatgttgcctccacct
atggatgattatagcagcaatagttctgctgctgtagcgaaacctatagtaaaaaatact
tcaaataatacaattagtataagcaagggttctcctccaaatggaagctccggcagatct
attgcacttcctgctgcagcttcatgggggatgcgtgctggtagtcagccacagactgct
gctaattcagcatcttcaaatggacctaataaaccaaaacaagacgttgttaatggcaca
ttaggtttatcaacaacagtagcaagtacaaaccaggcttctaccttgcatagtgatgtt
ggaaaaagggcaacttggaatgaagatggtcaagccaccagtggtaaaggcaaacaagat
ccattgaaatatgtcaaacctaatgttcaagatgatcccgttatatatgtcaaacctaat
gttgaagattttctagccaatatgccagataaaccatccactactgatggtgctgttgct
gaaacatcgagtaatcactcatctagtcctccagctaagcacaatgactggggctctcct
ttgttgtcaaatggtacagattcctttcttcatgttgtgccatcttccgggcatgaacag
ttgggaattagttctactgataaggaatcaataaagactgacaataattttagaagtcaa
ctttctggtttaatgagaactagtagtcctcttacagatcacagtgtgacaaaattgcct
ttatcgcctagcagtcaaggattacaacaatcatatcctgatcaatatagagaaccttta
tcttcaccaggaactgagaaaatttattgtccaagagaacagaagcctgattggagaaca
gatcctcaaattcaaacagttactaataatgtttctgaggtggaggaggatataatatca
tttgataatcagagactcaaggatccagaagttgtaactcggactacatgcatgccaaat
tcagctaattcactccatatttcaaataattcaaggtcgcatttgcaacataatgatctt
tttggtgctgctaatctaaattctgatcctctattcatggataatagatttgttgacaac
acacttatgcatgcatctagcaacactgtaatgtcaaatggatatcatgagaaattgctc
ggcagtgctgctggtttggatagaaacatagagcattccttctctcttccaaatgaaggg
gaagcaggccagctcattgaaaattttccaggggatgcaacatccttggatgtgggtgag
agcagcataatttcaaatatattatcactcgacctcgatggatgggatgatccattgact
tcacctcagaatttggccaagttgttgggtgaaactgataaacagcctagctctctaaaa
atgtcgggttcttggaaagttcaaaataacaatcagtcaaggttctcttttgcaagacag
gaagaaacgagaaatcaatttgttgacgtggatccatcttttagtgttttcggaaagttg
acaaagaatctctcagttaatcagaatttttcagaaaaaagaaaattgtatttggataag
gctgggatgagtaatggtttctctacctgtacttttgaggaatctgaaaattttaccagt
ggtccttcggttttctcttctaataagccttctgcagtttcaagagcccaaatttctgcc
cctcctggattctccactcctaacagacttccacccccgggcttttcttctcatgagagg
atagaccatctttttgattccttatctgggagtcatttgcttgactcgtcttccatgctg
agaaattcatatcagccaccctcaactggaaatatcaatagcagtggcgatattgaattc
atggatcctgcaattctggcagttggtaaagggagacttcaaggtgggctttccaatcca
ggcttagacatgagaccaagtttcccacaacagctaagtgcgtttgagaatgaggcaagg
cttcagttattgatgcaaagatctctctcaccccaccagaacctgagatatactgaaatt
ggggatagcttttcttctcttactgattcttatggcatttcctcgaggcttgtggatcaa
tcacaaatgagcaatttatctccttttatgcaaatgtctcttcagcattctaggaatgga
cttgtgtcaaatgggcactgggatggctggaatgaggttcaaggtggaaacaatcttggt
gtggcagaactattgcgtaatgagagactgggattgaataaattctacgctgctgggtat
gaagattccaagtttcgaatgccaagttcaggagacttgtataacagaacatttgagatg
tga
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