Manihot esculenta (cassava): 110612804
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Entry
110612804 CDS
T05761
Name
(RefSeq) nuclear poly(A) polymerase 4
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110612804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612804
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
110612804
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
110612804
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
110612804
NCBI-ProteinID:
XP_043812231
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All DBs
Position
4:complement(33547814..33553554)
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AA seq
719 aa
AA seq
DB search
MVSSEGLSSSPSPKQYGVTKPISMSGPTEADVHRSRELEKFLSDSGLYESQEEAAKRESV
LGRIGQIVKDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYV
NREEDFFFVLHNILLEMEEVTELQPVPDAHVPVMKFKFDGISVDLLYASISLLVLPDDLD
ISDVSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGF
LGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLCPIEEDELGFSVWDPR
INPRDRTHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICEDIELNKAQWSTLFE
PYLFFESYKNYLQVDIVAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYAHEYV
DTSKPCAHCAFFMGLQRKQGEVIQEGQQFDIRGTVDEFRHSINMYMFWKPGMEIYVYHVR
RKQIPSYVFPDGYRRPRHPRVTAHQQSDKPCCEDGGVCHIGSGERCLKRKKDPDEVDLKN
DRLEKRCSISPQRRDSISPDIISHKFGGTSPACLAFTEGNEMCEVDKKRFCSDNVEGGCT
SNSSAITSLSSEVGSCEDNGNESVAGSSEGNNGSADGSVEGSNNLGYSQSDSGDAYSSPD
SVCHLENVCTDGSELFQDRLQEELEPSAAVGMLLKTVGRGDEAALQKTVLSRLSLTSTS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggtgagttcggagggattgagttcttccccgtcgccgaagcagtatggtgttacgaaa
ccgatatcgatgtcggggccaactgaagctgatgtacatagaagccgcgaattggagaag
ttcttgagtgattctgggctttatgagagccaagaggaagctgcaaagagggagagtgtt
ctgggtcgaattgggcagattgtaaaagattgggtgaagcagcttactcgcttgaggggg
tacacagatcaaatggtggaggatgctaacgctgtcattttcacttttggctcttaccgt
ctcggggtacatggtcctggtgctgacattgacacattatgtgttgggccatcttatgtc
aatagagaggaggacttcttctttgtattgcataacattttgttggaaatggaagaagtt
acggagctgcaaccagttcctgatgctcatgtccccgtgatgaaattcaagtttgatgga
atatcagttgatcttctttatgccagtatttctctgttggttttaccagatgacctggac
atctcggatgtttctgttctctatgatgttgatgagcctactgttcgaagtctcaatggc
tgcagggttgctgatcaaattcttaagcttgttcctaatgttgagcattttcgcacaaca
ctacggtgtttgaagttttgggctaaaagacgaggcgtttattccaatgtgactgggttt
cttggtggtgtaaactgggctctccttgttgctcgagtgtgccaactttatcctaatgca
attcccagtatgcttgtgtctagatttttcagggtatttacacaatggcgctggccaaac
cctgtcatgctgtgcccaattgaagaggatgaacttggattttctgtttgggatcctcgt
ataaatccacgtgaccgaactcatcttatgccaataataacacctgcctatccatgcatg
aattctagctacaatgtatcaacaagtacactacgggtcatgatggagcaattccagtat
ggtaacaagatctgtgaggatattgagctgaataaagcccaatggagtactctgtttgag
ccatacttgttctttgaaagctacaaaaactatctacaagttgatatagttgcagctgat
gttgatgacttgcgatcttggaaaggctgggtcgaatcccggttaaggcaattgactctt
atgattgagcgagacacatttgggaagttgcagtgtcatccatatgctcatgagtatgtg
gacacctccaagccgtgtgcccattgtgctttttttatgggcttgcagaggaaacaaggg
gaggtaattcaggaagggcagcagtttgatatccgagggactgtagatgaatttaggcat
tccataaacatgtatatgttttggaaaccgggaatggaaatttatgtctatcatgttcgt
aggaagcagatcccttcgtatgtttttccagatggttataggcgtcctcggcatcctagg
gtcacagcacatcaacagtctgataagccatgctgtgaagatggtggtgtgtgtcacatt
ggctctggagagagatgccttaagaggaaaaaggatccggatgaagtggatttgaaaaat
gataggttagagaaacgatgttctattagtcctcagaggcgggattcaatttctcctgat
attatcagtcacaagtttggtggcacatctcctgcatgcttggcctttactgaaggaaat
gaaatgtgtgaagttgataaaaagagattttgctctgacaatgttgaggggggatgtaca
tcaaattccagtgcgatcacctccctttcaagcgaggttggctcgtgtgaggataatgga
aatgaatcagtagcaggcagcagtgagggaaacaatggaagcgctgatgggagtgttgaa
ggaagtaataacctggggtattctcaaagtgattctggtgatgcatattcatctccagat
tcagtatgtcatttggaaaatgtgtgcacagatggcagtgaactatttcaagatagattg
caggaagagcttgagccaagtgctgctgttgggatgttgctaaaaacggtgggccgaggt
gatgaggcagctttgcagaaaacagtcttaagcaggttaagcttaacatcaacgtcatga
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