Manihot esculenta (cassava): 110612813
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Entry
110612813 CDS
T05761
Name
(RefSeq) squalene synthase 1 isoform X2
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00100
Steroid biosynthesis
mesc00909
Sesquiterpenoid and triterpenoid biosynthesis
mesc01100
Metabolic pathways
mesc01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
110612813
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
110612813
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
mesc01006
]
110612813
Enzymes [BR:
mesc01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
110612813
Prenyltransferases [BR:
mesc01006
]
Terpene biosynthesis
Squalene/phytoene synthase
110612813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HEPN_SAV2148
Motif
Other DBs
NCBI-GeneID:
110612813
NCBI-ProteinID:
XP_021609313
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Position
4:complement(28600757..28615728)
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AA seq
413 aa
AA seq
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MGNLGAIWRHPDDFYPLLKLKMAARHAEKQIPPEPHWGFCYSMLHKVSRSFALVIQQLGT
QLRDAICIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHIYDREWHFSCGTKDYKVLMD
QFHHVSTAFLELGKSYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGL
SKLFHASGLEDLAPTVLSNSMGLFLQKTNIIRDYLEDIDEIPKSRMFWPHEIWSKYVNKL
EDLKYEENSIKAVQCLNDMVTNALIHVDDCLKYMSALRDPDIFRFCAIPQIMAIGTLALC
YNNIEVFRGVVKMRRGLTAKVIDQTKTMADIYGAFFDFSCMLKSKVDRSDPNAEKTISWV
ESIEKTCWESGLLNKRKSYIIRDKPRYNSALIVLLFIILSIILAYRSGNQPSN
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggggaatttgggagcgatttggagacacccagatgatttttatccgcttttgaagttg
aaaatggcagccaggcatgcagaaaagcagatcccaccagaacctcactggggtttctgt
tattccatgcttcacaaggtctctcgtagcttcgctctcgtcattcaacagcttggtact
cagcttcgagacgctatatgcatattctatttggttcttcgagcccttgatactgttgag
gacgatacaagcatacctacagatgtgaaggtgcctattctgatagcttttcaccgtcac
atatatgatcgcgagtggcatttttcttgtggtactaaggactacaaagttctaatggac
cagtttcatcatgtttcaactgcctttctagagcttgggaaaagttatcaggaggcaatt
gaggatattacaaaaagaatgggtgcaggaatggctaaattcatatgcaaggaggtggaa
actgttgatgactacgatgagtattgccattatgtagctggacttgttggactaggcctc
tccaagcttttccatgcctcgggattagaagatttggcaccaactgtcctctccaactcg
atgggtttatttcttcagaaaacaaacattattagagattatctggaggatatagatgag
atccctaagtctcgcatgttttggcctcatgagatctggagtaaatatgttaacaaactt
gaggacttgaaatatgaagagaactcgatcaaggcagtgcaatgcttgaatgacatggtt
actaatgctttgattcatgtcgatgattgcttgaaatacatgtctgcattgagagatcct
gatatatttcgattttgtgccatccctcagatcatggcaattggaacgctagcattgtgc
tacaacaacattgaagtattcagaggcgtagtgaaaatgaggcgtggtctcactgccaaa
gtcattgaccaaacaaaaactatggctgatatctatggtgctttctttgacttctcctgt
atgctcaagtccaaggttgacagaagtgatcctaatgcagaaaagacgattagctgggtc
gaatcaatagaaaaaacttgctgggaatctggacttttaaacaaaaggaaatcttacata
attagggacaagcctagatataattctgctctgattgtcctactttttatcatattgtcc
atcattttggcctatcgctctgggaaccaaccaagcaactga
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