Manihot esculenta (cassava): 110612856
Help
Entry
110612856 CDS
T05761
Name
(RefSeq) uncharacterized protein LOC110612856 isoform X1
KO
K18734
protein SMG8
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612856
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110612856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
110612856
NCBI-ProteinID:
XP_021609374
LinkDB
All DBs
Position
4:1704512..1711748
Genome browser
AA seq
1214 aa
AA seq
DB search
MDSTNPNPPSMRVLTRPPPSAPIPASSPDAQSSSQSHPRSLEGVVVVGFVSRSPDHSSQL
INRVLDSNTFGSGNLDKLLLIDKEEVRDWFSRRRISYYHEEEKGILFLQFGSTRCPAVHG
CSGPDSGLSSCLEEREFEDLQGLLFMFSVCHVIIYIQEGSCFDPCILKKFRVLQAAKHAL
APYVRSRTTPPLPSRSHASSSSSRPTPSTGSSPGRSSVTNRGASAISLMSGLGFYTSLFP
GHCTPVILFVFVDDFFEIPNPNSNTEELKDLSSLNKSSSSVSRPNLPTKGSGSVVVLARP
VSKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGAESGHAGSRSGTVSSSAPLFSLDASRAV
VLLDRSINQRGESLEFVTDLVEDVLNGKATSDSLLLESHGQSGNKEEILSIKEFIYRQSD
ILRGRGGLVTGTNSGPAAGVGMVAVAAAAAAASAASGKTFSTPELPSLEIWLSSSQLILH
GILSAKRGCLDETEAVKRKPRQRNSGSTQVDGFAPKGMDPLDAAVSLLESGRGLNAKFST
SWCERTLPTAKDIYLKDLPACYPTSEHEAHLEKALNAFHSMVRGPAVPLFAKRLEDECTA
IWKSGRQLCDAVSLTGKPCMHQRHDIGSGETESPLGAPVKAHSSGYFFLHACACGRSRQL
RSDPFEFESANVSSNCFQNCDKLLPAVQLPKLDNVGPVHSSSWRLIRVGGARYYEPSRGL
LQSGFSASRKFLSKWTIILEKPESPNVLPAKTVQQGSMTRQGTDPQVEVNAETDRKKTAA
ARLYSGDMHVGVENQRKLSENSKIDDKKISFGRGMANFTMRKPFSEVVAGSSATDSGFPP
LQQRRQPASGSERSSKQNRARDRNAEQVHTIVDQGSQTSEDVISGKEALNEISSSGGKHG
DPYVQIGSNVVPVNINGGEMVNLNPTLKHAIVYIGFEHECPHGHRFLLSLDLLDELGSPY
SFPKEYQVPYVETSDHNVASPSKLGWNSGHGRIHRSSKGTNFVGANKFRNVDKLNGVNVG
LYIDGLIQLTGAEKEQNQASTPEPTYQDFVKNLEVDFHSISLDDGGGAFSMLNRNLPIYM
NCPYCRRSRNKKDPQKIKFAGTISQLQRIFLVTPAFPVVLATCPVVQFEVSCLPPSVADR
ERKLQFSLGCRVVLPPESFLTLRLPFVYGVQLEDGTPLPINAFEHQPEKTAWIMKGTALQ
VISKQSSLNKEAQT
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggactctacgaatccaaatccaccctccatgcgggtcctgacccgtccacctccctca
gcacccatccccgcttcttctccagatgctcaatcatcttcccaatcccaccctcgttct
ctagaaggcgttgttgttgttgggtttgtttcacgtagccctgaccactcttcccagctc
ataaaccgtgtcctggactctaacacattcgggtcaggtaatctcgataagctactgtta
atcgataaagaggaggtgagagattggttcagtaggaggagaatcagttattaccatgag
gaggagaaggggattttgttcttgcagtttggttcaacccggtgccccgctgttcatggg
tgttcaggtccggattctgggttaagctcatgtttggaagagcgggagtttgaagatctt
caggggttgcttttcatgttttctgtgtgccatgtaattatatatattcaggagggttcg
tgctttgatccttgtattttgaaaaagtttagggttttacaagcagccaagcatgcattg
gctccatatgtaaggtccagaactaccccgccattgccatctaggtctcatgcttcatca
tcgtcctctaggccaaccccttcaactggttcctctccaggaagaagtagtgtcacgaat
cgcggtgcttcagctatctctctcatgtcgggtttaggtttctacacatcattgtttcct
ggacattgtactccagtcatactatttgtctttgttgatgatttctttgagataccaaat
cctaattctaacacagaggaattgaaagatttgtcctcacttaataaatcttctagtagt
gtatctaggccaaacttacctactaagggttctggttcagttgttgtgctagcacgccct
gtcagtaaatctgaaggtggtttcaggaagaaactgcagtcatctcttgaagcacaaatt
cgttttctgattaagaaatgccgaacactctcaggtgctgaaagtggtcatgctggatcc
agaagtggaactgtttcaagttctgcacctttgttttctcttgatgcttcacgggctgtt
gtgctgctcgacaggtcaataaatcagagaggtgaatctctggagtttgttacagacctt
gtggaagatgttttgaatggaaaagcaacatcagattctcttttacttgaaagtcatggt
cagagtggaaacaaggaggagattttatccataaaggagttcatttacagacaatctgat
attctgagaggtagagggggattggtcactgggaccaacagtggtccagctgctggtgtt
ggcatggttgctgtagctgcagctgctgctgcagcctcagctgcatctggaaagacattt
agtactcctgaacttccaagtttggaaatatggttatcatcaagccaacttattctacat
ggaattttatctgcaaaacgtgggtgtctagatgaaacagaagctgttaaaagaaaacct
cgccagcgaaactctggttcaacccaagtcgatgggtttgctcctaaaggcatggatcct
ttagatgctgcagtttctctgttggaaagtggtagaggactgaatgcaaaattttcaact
tcttggtgtgaaaggacccttccaactgccaaggatatttatctgaaggatttgccagct
tgttatcccacttcagagcatgaagcccatttagaaaaggctttaaatgctttccactca
atggtcaggggacctgcagtgcctctgtttgcaaaaaggctggaggatgaatgcacagcc
atctggaaatctggtaggcaattatgtgatgctgttagtttgacaggaaaaccatgtatg
caccagagacatgatattggcagtggggagacggagtcacctttaggagctccagtgaag
gcacattcaagtggatactttttccttcatgcttgtgcctgtggccgctcacgtcaactg
cggtcagacccttttgagtttgaatcagcaaatgttagttccaattgctttcaaaactgt
gacaaactgcttcctgcagtccagttaccaaagctagataatgtgggacctgttcattca
tcctcgtggaggttgattcgtgttgggggagcaaggtattatgaaccttctaggggttta
cttcagagtgggttctctgcctcacgtaagtttctctcgaagtggacaataattttggag
aaaccagagagtccaaatgttttaccagccaaaactgtgcaacaaggttcaatgactagg
caaggtacagacccacaggttgaagttaatgccgagacagacagaaagaaaactgcagct
gcaaggttatactcaggagacatgcatgtcggggttgaaaatcagcggaaactttcagaa
aacagcaagattgatgacaaaaaaattagttttggtagagggatggcaaattttacaatg
agaaaacccttttctgaagttgttgctggatcgtcagctactgattcagggtttcctccc
ctccagcagaggagacaacctgcatcaggttcagaaagaagttccaaacaaaacagggca
agggataggaatgcagaacaggttcatacaattgttgatcaaggatctcaaacatctgaa
gatgttatttctggtaaagaagccttgaatgaaatatctagcagtggtgggaaacatggg
gacccttatgtacagataggaagtaatgtagttcctgtgaacattaatggtggtgaaatg
gttaacctgaaccctactttaaaacatgcaattgtttatattggttttgagcatgagtgc
ccccatggccaccgtttcttattaagtctggatctgcttgatgaactaggatctccatat
tcttttcccaaagaatatcaagtcccttatgtggaaacttctgaccataatgtggcaagt
ccttcaaaattgggttggaacagtggacatggtagaattcatcgaagctcaaagggaaca
aattttgttggtgcaaataagtttcggaatgtggataagttaaatggtgtgaatgttggt
ttatatattgatgggttgatacagctcactggggcagagaaggaacagaatcaagcatct
acccctgaaccaacatatcaagattttgtgaaaaatcttgaagtggactttcattcgatt
agccttgatgatggcggaggtgctttctccatgttgaatagaaatttacctatatacatg
aactgtccatactgcaggcgttctagaaataagaaagatcctcaaaagattaagtttgct
ggcacaatatcacagttacagaggatctttttggtaacacctgcatttccagttgtatta
gcaacatgcccagttgtacaatttgaggtgtcatgcttgcccccatcagttgcagaccgt
gaacgaaagttgcagttcagccttggatgtcgagtggtcctaccgccagaaagttttctg
acactaagactcccatttgtttatggtgtgcaactagaggatggaactccacttcctatt
aatgcttttgaacatcaaccagaaaagactgcttggataatgaagggcacagcattgcag
gtgatttccaagcaaagcagtctcaataaggaagcccagacgtag
DBGET
integrated database retrieval system
