KEGG   Manihot esculenta (cassava): 110612899
Entry
110612899         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110612899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110612899
Enzymes [BR:mesc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110612899
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110612899
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 110612899
NCBI-ProteinID: XP_021609435
LinkDB
Position
4:35401143..35419015
AA seq 1937 aa
MEDNVQPTILEGEVVGIRFGLATHKEISTASVSDCPISHSSQLTNPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPIPIYHPSHVSELKRLLSLLCLKCLKMKTNKFQVKSNGVAERL
FSCCEEASQISIKDIKTTDGAFFLKLKLPSRMRMRDGFWNFLERYGFRYGDDIIRTLLPC
EVMEMLRRIPQETRKKLARKGYFPQDGYIMRYIPVPPNCLSVPDISDGISVMSSDLSISM
LKKVLKQVEIIKSSRSGPANFESHEVEAVDLQSAVDQYLQVRGTARASRDVEARFGVHKE
SNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGIPFEIAQRITFEERVNVH
NIKHLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDKVFINRPPTT
HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQ
LLSSHSGNLNLQLTTDSLLSLKRMFKENFLNKAAAQQLALFVSSSLPQPALRKVHHFGPF
WTAPQILQMALPSLFDCIGERYLISEGDFVKVDFSRDSVQAIINEVVISIFFEKGPDAVF
KFFNSLQPLLMENMFSEGFSVDLKDFYIFRAAMESIHRDFKVISPLLSHLRSRYNELVEL
QLENHIRYAKLPVEEFILRSSSLGELIDCKSDSAMTKLVQQIGFLGLQISDRGKFYTKTL
VEDVASHFERKYPSDLVDYPSAQYGLIQSCFFHGLDPYEEMVHSISTREVIVRSSRGLSE
PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNSGVTAQSLFPAGEPVGVLAAT
AMSNPAYKAVLDSTPSSNSSWELMKEILLCRVNFKNDLTDRRIILYFNDCGCGRSYCQEK
AAYLVRNSLERVILKDIAKCFMIEYKKQQTIADASLVGHIHLEKMKLQELNVGMEVILQK
CKDTITSFRKKKKHAIFKKIEVSMSECCSFEQSYADEWSSMPCLTFFWLDPDVHLENISH
IFADVVCPVLLETIIKGDHRISSASIIWVSPDTTTWIRNPSSAQKGELALDVVIEKSAVK
QSGDGWRIVLDSCLPVLHLIDTTRSIPYAIKQVQELLGVSCAFDQAVQRLSTSVKMVAKG
VLKEHLVLLANSMTCAGNLVGFNSGGYKSLSRSLDIQVPFTEATLFTPRKCFERAAEKCH
VDTLSSVVASCSWGKCVAVGTGSRFDLLWDQGEACFNQEGKTDVYEFLNMVRSANGEESV
TACLGAEVDELMEDEIDWNLSPEHNFGSEKPIFEDTAEFQEKPWSSWGTDTVETQNALST
KAQEQSDKSSGWDTAATWQTKAKENTDEASTWSGWRTRKTEESDLPAMKVQKNPELSSSW
DNAAAWQKNVSGSTEKIGIETNSWSGWGTRKTGAHDDLAIKPQEETGRPSDKDDGVAWGK
GAQGDAQLENYGATLLKSNPNSWSGWDRKATENQLISGRASSTAEDWSKDKSPPLESCVD
NSSWGKPKSSDVPCGWGSPKDSVKARSSLGWGLPDSGAANSPDVSRSWDLPKDSIKVGTS
QGWGLPDSAAPKSPEVSHCWDLPKDSLKAANSLKAASSQGWGLPDSEAAKSPEVTQDWGL
SKESVKSESSQGWGLPNSGASPEVSQGWGSSKESVKAANSQGWGLPNSGASQEVSQGWGS
ANESVKAAGSQGWGLPDSEAGNGSDRQQQWGQQQSGEFKRKRAEGSRGWGSKSADWKSKN
RPAKSPGNVHDDSSMSGMYTATRQRLDMFTSEEQDILSDIEPLMRSIRRVMHQSGYNDGD
ALSAADQSYVLDNVFNYHPDKAAKMGSGIDHVTVSKHSSFQESRCFYVVSTDGSKQDFSY
RKCLENFIKGKYPDLAEEFIEKYFTRPRARANRQQQNSVSGRSGDDSQQQNLVKERSQDD
NQVQNLITEGNADENRS
NT seq 5814 nt   +upstreamnt  +downstreamnt
atggaggacaatgttcaacccaccattttggagggggaggtagttggaatcagatttggt
ttggcgactcataaggaaatatctacggcatctgttagtgactgccccataagccattct
agtcagcttacaaatccattccttggtttgccacttgaatttggtaaatgcgagtcttgt
ggcacatctgaacctggaaaatgtgaaggtcactttggttatattgaactgccaatacca
atatatcatccaagtcatgttagtgaattgaagcgattgttaagcttattgtgcttaaag
tgcttgaaaatgaaaacaaataagtttcaggtcaagagcaatggtgtggctgaacgattg
ttttcgtgttgtgaggaggcttctcaaatttctattaaagatattaaaacaacagatggt
gctttctttttgaaattgaagctaccatctaggatgagaatgagagatggtttttggaat
ttcttagaaagatatggttttcgctacggtgacgacatcatccgaacattgcttccctgt
gaggtgatggaaatgcttaggagaattccacaagagactaggaaaaaacttgctagaaaa
gggtattttcctcaggatggttatatcatgcgatatataccggttccacctaactgtttg
tcagttccagacatttcggatggcattagcgtcatgtcctctgatctttctatatctatg
cttaagaaagttcttaagcaagttgagataatcaaaagctcacgatctggcccagcaaat
tttgaatcccatgaagttgaagctgttgatttgcagtcggcagtggatcaatatcttcaa
gttaggggtactgcaagagcatctcgggatgttgaagcaagatttggggtacacaaggag
tccaatgattcctcaaccaaagcatggcttgagaaaatgaggactttgttcattagaaag
ggttctggattctcttcacgcagtgtgattacaggtgatgcgtacaagcgtgtgaatgag
attggcatccctttcgaaattgctcagagaatcacatttgaggagagggttaatgtgcac
aacatcaagcatctgcaagagcttgtggacaacaaattgtgcctgacatacaaggatgga
tcttccacttattcgctcagagaaggttccaagggacacacattccttcgtccaggtcag
attgtccatcggcgaattatggatggagataaagtcttcatcaatagaccaccaacaaca
cacaagcattctttgcaagcactgtctgtttatgtgcatgatgatcatactgtgaagatt
aatcctcttatatgtgggcccttgagtgctgattttgatggtgattgtattcatctattc
tatcctcagtctcttgctgcaaaagcggaagtcttggagttgttctcagttgagaagcaa
ttgcttagctcccatagtggcaatctgaatttacaactgaccacagattctcttttatct
ttgaagagaatgtttaaggaaaacttcttgaacaaagcagctgctcagcaattagcttta
tttgtatcatcttctttgccacagcctgctttgaggaaagttcaccattttggcccattt
tggactgctccacagatattacaaatggctttgccttctttgtttgattgcattggggaa
aggtacttaatcagtgaaggggactttgtgaaggttgacttcagtagggatagtgtgcag
gccatcattaatgaagttgtcatctctatcttttttgagaaaggtcctgatgccgttttt
aaattctttaactctttgcagccgttgttgatggaaaatatgttttctgaaggttttagt
gttgacttgaaggacttttacatatttagggctgccatggagagtattcatagagacttt
aaggtcatttctcctttgcttagtcacttaaggtcaagatacaatgaactggtggagttg
caattggagaatcacatccggtatgccaaactacctgttgaagaatttattttgagatca
tcttccctaggtgaattaattgactgtaagagtgattcagccatgactaagttagttcaa
caaattggcttcttgggcctgcaaatttcagacagagggaagttctatactaagacattg
gttgaggatgttgcttctcattttgagagaaaatatccttctgatttagttgattatcca
tctgcacagtatggattgattcaaagctgtttctttcatgggttagatccatatgaagag
atggtacactcaatatctacaagagaggttattgttcggtcatcaaggggattatctgaa
cctggaaccttgttcaagaacttgatggctatccttcgggatgtagtgatttgttatgat
ggaacagtgaggaatgtgtgcagcaattcaataatccagtttgagtatggagtaaattca
ggagttacggcgcagagtttattccctgcgggtgaacctgtaggagtattagctgcaact
gctatgtccaatcctgcatacaaagcagttcttgactctactccaagtagcaactcctca
tgggagttgatgaaggaaatacttctgtgcagagttaacttcaagaatgatcttacagat
cgtcgcatcattttatattttaatgattgtggttgtgggagaagttactgccaggaaaaa
gcggcttacttggtgaggaatagcttggagagagtaattcttaaagatattgcaaagtgt
tttatgattgaatacaagaagcagcaaacaatagcagatgccagccttgttggtcatatt
catcttgaaaagatgaagttgcaagaactgaatgttggtatggaggttattcttcaaaag
tgcaaagatactatcacttcatttcgaaagaagaaaaagcatgctatttttaaaaagata
gaggtgtctatgagtgaatgttgctcttttgagcaatcttatgctgatgaatggtctagc
atgccgtgcttgacgttcttttggctagacccagatgttcatttggagaacatttcacat
atcttcgccgatgtggtttgtcctgtcttgttggagacaataatcaaaggtgaccatcgc
atttcctctgcaagcattatttgggttagtcctgatacaacaacttggataagaaatccc
tccagtgctcagaagggggaactagccctggatgttgttattgagaaatcagcggtgaaa
caaagtggtgatggatggagaattgtcctagattcatgtcttcctgttcttcacctgatt
gatactacacgttctataccatatgccattaaacaagttcaggaattgttgggagtttct
tgtgcatttgatcaagcagttcagcgcctctcaacatcggtgaaaatggtggcaaaaggt
gtgctcaaggagcaccttgttctccttgcaaatagcatgacatgtgctggaaatttggtt
ggcttcaattctggcgggtacaaatcattatctcgctcattggatatccaagtaccattt
actgaggcaactctctttaccccaagaaaatgttttgagagagctgcagaaaagtgtcat
gtagatactttgtccagtgtagttgcatcttgttcgtggggtaagtgtgtggcagttggt
acaggatcacgatttgatttgctctgggaccagggggaggcttgtttcaatcaagagggc
aaaaccgatgtgtatgaatttctgaatatggtgagaagtgcaaatggggaagaatcagtc
actgcttgtttaggtgcagaagttgatgagcttatggaagatgaaattgactggaacctg
tccccagagcacaattttggttctgagaagcccatctttgaagacactgctgaatttcaa
gaaaagccctggtctagttggggaacagatacagttgaaacacaaaatgcactctccaca
aaagcccaagagcaatctgacaagtcaagtggttgggatactgcagctacatggcagaca
aaagcaaaggaaaacactgatgaggcaagcacatggtctggttggagaacaaggaaaacg
gaagaatctgatctccctgcgatgaaagtgcaaaaaaatcctgaactgtctagcagttgg
gataatgcagctgcttggcagaaaaatgtcagcggaagtactgagaaaattggaattgag
acaaactcttggtctggttggggaacgaggaaaaccggagcacatgatgaccttgcaatt
aaacctcaagaagaaactgggaggcccagtgataaggatgatggtgttgcctggggaaaa
ggggctcaaggtgatgctcagttggaaaattatggggccactttattgaagtcaaatcca
aatagttggtctgggtgggataggaaggcaactgagaatcagctgatatctggtagggct
tcttcaactgctgaagactggagtaaggacaaaagtccacctttggagtcatgtgtggac
aatagcagttgggggaaacccaagtcatctgatgttccatgtggctggggctcaccaaaa
gactctgttaaagccagaagttccctgggttggggcttgccagattcaggagcagctaat
tcacctgatgtttcacgcagctgggacttaccaaaggattctattaaagtaggaacttcc
cagggctggggcctgccagattcagcagcacccaagtcacccgaagtttcacattgctgg
gacttgccaaaagattctctcaaagcagcaaattctctcaaagcagcaagttctcagggt
tggggcctgccagattcagaagcagctaaatctcctgaagttacacaagactggggcttg
tccaaagagtctgttaaatcagaaagttcccagggatggggcctgccaaattcaggagcc
agtcctgaagtttcacaaggctggggctcatccaaagagtctgttaaagctgcaaattcc
cagggttggggcctgccaaattcgggagccagccaagaagtttcacaaggctggggctca
gccaatgagtctgtaaaagcagcaggttcccagggttggggcctaccagattcagaagct
ggcaatgggagtgatagacaacaacagtggggacaacaacagagtggagaatttaagaga
aaaagagctgaaggatcaagaggttggggttcaaaaagtgctgattggaaaagcaagaac
cgccccgctaagtcacctggaaatgtccacgatgattctagtatgagtgggatgtataca
gcaaccagacagaggttggacatgtttacatctgaagagcaggatattctttctgatatt
gagccactaatgcggtctattagaagagtaatgcatcaatctgggtacaatgatggggat
gcactgtctgctgctgaccagtcatatgtgcttgataatgtcttcaactatcatccagat
aaagcggcaaagatgggttctggcattgaccatgtcacagttagcaagcacagcagtttc
caggaaagcaggtgcttctatgttgtttcgactgatggtagcaaacaagatttttcctac
cgaaaatgcctagaaaactttatcaaggggaagtatcctgacttggctgaggaattcata
gaaaaatatttcactagacctcgtgccagagccaaccgccagcagcaaaactctgtttca
ggaagaagcggtgatgacagccagcagcaaaaccttgtaaaagagagaagtcaggatgac
aaccaggtgcaaaacctcattacagagggaaatgcagatgagaataggtcataa

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