Manihot esculenta (cassava): 110612927
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Entry
110612927 CDS
T05761
Name
(RefSeq) protein PAF1 homolog isoform X2
KO
K15174
RNA polymerase II-associated factor 1
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110612927
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
110612927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
110612927
NCBI-ProteinID:
XP_021609480
LinkDB
All DBs
Position
4:33507402..33513189
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AA seq
699 aa
AA seq
DB search
MASYRPFPPQSTFPPPPQPPQQQQQQQQQRPNQYTQNYSQMAPAGAASSSTFPQNYPQIP
TQQNFSQHYPPRHAQQPAPPPPPPHQQYPYQPPPPPPAPESSYPPPPPPPAAPAQQQPPP
PMYYPSSQYSQYGHQPLQQPMQPPPPPPPPSSPPSSSIPPPPPPSSPPPPPPKDSITERG
KPVPEVRRERGHSSHSGVVKQKPQKPPVPPGGKKGNGPSGRVETEEERRLRKKKEFEKQR
LEGKHRQQLKESQNTILQKTQLLSSQKGHGSIVGSRMGDRRATPLLGGERIENRLKKPTT
FLCKMKFRNELPDPSAQPKFMTLKRDKDRFTKYTITSLEKMHKPQLYTEPDLGIPLDLLD
LSVYNPPKVRQPLAPEDEELLRDDDELVTPVKRDGIRKKERPTDKGVSWLVKTQYISPLS
MESAKQSLTEKQAKELRESKVGRNLLENLNNRESQIKEIEASFEASKLPPVHATNKNLRP
VEILPLLPDFARYKDKFVSVTFDNAPTADSESYSKLDQSVRDACESQAIMKACVTSSSDP
AKQEKFLAYMAPNPNELSKDVYDENEDISYNWVREYNWDVRGDDANDPTTFLVSLDEDAA
RYVPLPTKINLRKKRASEGRSADEVEQFPPPSRITVRNRPTAAAIEIRNTGANSNSRGNI
LNSRMGMSDDDDDALARMRRLAKGKGIDHSGGAEDDLSD
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatataggccatttcctccacaatccactttcccgccgcccccacaaccacca
caacagcaacagcaacagcaacagcagagacctaatcagtatactcaaaactactctcag
atggctccagctggagcagcttcttcctctacattcccccaaaactatccccaaattcct
acccagcagaatttctcacaacattatcctcctcggcatgctcaacaacctgcccctcca
ccaccaccacctcaccaacagtatccatatcagccacccccgccacccccagcaccagaa
tcatcatacccacctccacctccgccaccagcagctccagcccaacagcaaccaccacct
cctatgtactacccatcatcacagtattctcagtatggtcatcagccattgcagcaacca
atgcagccacctcctccgcccccacccccttcatcacctcctagctcttcaataccaccc
ccgccacctcccagctccccacccccacctcctcctaaggatagcatcacagaaagaggc
aaaccggtgcctgaggtaaggagagaacgcgggcattcaagtcatagtggtgtagtcaaa
caaaagccgcagaagccaccagttccgcctgggggcaagaaggggaatggaccatcaggg
agggtggaaacagaggaggagagaaggttgaggaaaaaaaaggagtttgagaagcaaagg
ttagagggtaagcataggcagcagttgaaagaatctcagaacacaattctgcagaagacc
cagttgttatcttctcagaaggggcatggttctattgttgggtcccgtatgggggatagg
agggcaactccattactgggtggggagaggattgagaataggttgaagaagccaacaact
ttcttatgcaaaatgaaattccggaatgaacttcctgatccaagtgcacaaccaaagttc
atgactctgaagagagataaagatcgatttacaaaatacacaatcacctcattggagaaa
atgcataagcctcaactgtatactgagccagatcttgggataccgcttgacctgcttgat
ctcagtgtctacaatccacctaaggttaggcaacctcttgctccggaagatgaggagttg
ttgcgtgatgatgatgaattggttacccccgtaaaacgagatggcataagaaaaaaagaa
cggcccactgataaaggtgtttcttggctggtgaaaactcaatatatatctcctttaagt
atggaatcggccaagcagtcccttactgaaaaacaagcaaaagaattgcgagaaagtaaa
gtaggccgtaaccttttggagaacctcaataacagagagagtcaaatcaaggaaattgaa
gcatcttttgaagcaagcaagttaccccctgtccatgcaaccaataaaaatttgaggccc
gttgaaattttgccattgctacctgattttgctaggtacaaagataaatttgtctctgtg
acatttgataatgctcctacggctgattcagaatcctatagcaagttggatcaatctgtt
cgtgatgcctgtgaatcacaggctattatgaaagcttgtgtcacatctagctcagatcca
gctaaacaggaaaaatttttagcgtacatggcccctaaccctaatgagctgtcaaaggat
gtttatgatgaaaatgaggatatttcatataactgggttcgtgagtacaactgggatgtg
cgaggtgatgatgctaatgacccaacaacattccttgtttcattagacgaggatgcagca
cgctatgtgcctcttcccacaaagattaatttaaggaaaaagcgagccagtgagggaagg
tccgcggatgaggtagagcaatttccaccaccatcaagaataacagtaaggaacagacca
actgctgctgcaatagaaatcaggaatacaggggctaattcaaattcaagaggtaatatc
ctgaattcaaggatgggaatgtcagatgatgatgatgatgcccttgcaagaatgcggagg
cttgctaaaggcaagggtattgaccattccggtggagctgaagatgacttgtctgattga
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