Manihot esculenta (cassava): 110612929
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Entry
110612929 CDS
T05761
Name
(RefSeq) syntaxin-42 isoform X1
KO
K08489
syntaxin 16
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
110612929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110612929
Membrane trafficking [BR:
mesc04131
]
SNARE
Syntaxin (Qa)
Stx-TGN / EE
110612929
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNARE
Prominin
Syntaxin_2
EF-G-binding_N
Use1
DUF7877
MCPsignal
Motif
Other DBs
NCBI-GeneID:
110612929
NCBI-ProteinID:
XP_021609485
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All DBs
Position
1:39017739..39020995
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AA seq
321 aa
AA seq
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MATRNRTIQYKKHRDAVKSVRAPLSSSVSGLRGPVIEMVNTSILRSNHASYTPLSTEEPG
PSSSDAFTIGLPPAWVDDTEEIAANIQIVRTKMAELVKAHSKALMPSFGDGREDQRTIEV
LTREITDLLRKSEKRLQKLPASESPEDSNIRKNVQHSLATDLQNLSMDLRRRQSTYLKRL
QQQKEGHDGVGFEMSLNEKKPRYKDDEFGDMGFNQLQTIQLKKSEQLTEEREREIEQVVA
SVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVASSVDEGFKQLQKAERSQKKGGMVMCA
TVLVIMCFIMLVLLILKHLFL
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagaaaccggaccattcagtacaagaagcacagagatgcagtgaagagcgtg
cgggctcctttgtcgtcgtcagtgtcaggtttgaggggtccggttattgaaatggttaat
acttcgatacttcgttccaatcatgcctcctatactccccttagcactgaagaacctggt
ccttccagtagcgatgcctttacaattggtttgccaccagcctgggtggatgatactgaa
gaaatagctgcaaatattcagattgttcgaaccaaaatggctgagttagtcaaggcgcat
tcaaaagcattaatgccttcctttggagatggcagagaagatcagcgaaccattgaggtt
cttactcgagagattactgatttattgaggaaatctgagaagagattacagaaacttcct
gctagtgagtctcctgaggattcaaatattagaaaaaatgtacagcattctcttgcaaca
gaccttcagaacctctcaatggatcttcggagaagacagtcaacatatcttaaacgtttg
cagcagcaaaaagagggacatgatggtgttggcttcgagatgagcctaaatgagaaaaaa
cccagatataaagatgatgaatttggtgatatgggttttaatcagctccaaacaattcag
ctaaagaagagtgagcaattaactgaggaaagggaaagagagattgaacaggtggtggca
tcagtaaatgagcttgctcaaatcatgaaggacctatctgtccttgtgatcgatcagggt
acaattgttgatcggatagactacaacattcagaatgttgcatcatccgtagatgagggc
tttaaacagctgcagaaggcagagagatcgcagaagaaaggagggatggtgatgtgtgcg
acagtgcttgttattatgtgtttcatcatgctggtactcttgatcctcaagcatttattt
ttgtga
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