Manihot esculenta (cassava): 110612930
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Entry
110612930 CDS
T05761
Name
(RefSeq) WD-40 repeat-containing protein MSI2
KO
K10752
histone-binding protein RBBP4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
mesc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110612930
03083 Polycomb repressive complex
110612930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110612930
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
110612930
Histone modification proteins
HAT complexes
HATB complex
110612930
HDAC complexes
Sin3A-HDAC complex
110612930
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
110612930
PRC2.2
110612930
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
110612930
Heterochromatin formation proteins
Other heterochromatin formation proteins
110612930
Chromatin remodeling factors
NuRD complex
110612930
NuRF complex
110612930
NuRF complex (fruit fly)
110612930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
Beta-prop_EML
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_HPS5
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
110612930
NCBI-ProteinID:
XP_021609483
LinkDB
All DBs
Position
4:27372789..27379568
Genome browser
AA seq
410 aa
AA seq
DB search
MAAEEEQELTPEQLDEEFSVWKKNTPFLYDLVISHPLEWPSLTVQWVPLPDPLSHPTDPS
SFSVHKLVLGTHTSDDFPNFLMVADAVLPIRTAEAKFDSQSESSLIPQVQITQKIHVDGE
VNRARCMPQNPAIIAAKTSGCEAYVFDSSKQAEKQQQDSCDPDFRLRGHDKEGYGLSWSP
FKQGYLISGSHDHKICLWDLSATSLDKVLDPMHVYESHESVVEDVSWHLKNENLFGSVGD
DGQLMIWDLRTNQTQHSVKAHEKEVNYLSFNAYNEWILATASSDTTVGLFDMRKLTVPLH
VLSGHTEEVFQVEWDPNHETVLASTADDRRLNVWDLNRIGEEQLELDADDGPPELLFSHG
GHKAKISDFSWNKNEPWVISSVADDNTLQVWQMDEGIYRDDDDVIVADER
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaagaagagcaagagctaactcctgaacaattggatgaggaattctctgtt
tggaagaagaacacgccatttctctacgatcttgtcatctctcaccctctcgagtggcct
tctctcactgtccaatgggttcccctccccgacccactgtctcaccccaccgatccttct
tctttctctgtacacaagctggtcctcggaacacatacatccgatgatttccccaacttc
ctcatggttgctgacgccgtcctgcctatccgcactgctgaagcgaagtttgattcccaa
tctgaaagttctttgattcctcaggtgcaaataactcagaaaatacatgttgatggagag
gttaatcgagcacgatgtatgcctcagaacccagctattattgctgcaaagacaagtggt
tgtgaggcttatgtgtttgattcatccaaacaggctgagaagcaacagcaggatagttgt
gatcctgatttcaggttgaggggtcatgataaagaaggatatgggttgtcttggagtccc
tttaagcaggggtatcttatcagtggttcacatgatcataaaatatgcttgtgggatttg
tctgccacttctctagataaagtgcttgatcctatgcatgtttatgagtctcatgagagt
gttgttgaagacgtctcgtggcacttgaagaatgagaatttatttggttctgtgggtgat
gatggtcaattaatgatctgggacttgcgcacaaatcaaacacaacattctgttaaggct
catgaaaaggaggttaattatctttctttcaatgcttataatgaatggattcttgctacg
gcatcctcggacactactgttggtctgtttgatatgcggaagctgactgtgcctttgcat
gttttaagcggtcacacagaagaggtattccaggtggaatgggatcctaatcatgaaaca
gtactagcatctactgctgatgacagaaggctaaatgtttgggatctgaacaggattgga
gaggagcaattagagttagatgctgatgatggccctcctgaacttcttttctctcatgga
ggtcacaaggcaaagatctcagatttttcatggaacaaaaatgagccctgggtcatttca
agtgtggctgatgacaacactctgcaagtctggcaaatggatgagggtatttatcgtgat
gatgatgatgtgatagttgccgatgaaagataa
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