Manihot esculenta (cassava): 110612986
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Entry
110612986 CDS
T05761
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110612986
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110612986
Surveillance factors
Other surveillance factors
110612986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
110612986
NCBI-ProteinID:
XP_043811646
LinkDB
All DBs
Position
4:29332808..29343067
Genome browser
AA seq
1645 aa
AA seq
DB search
MADGKLTLPDDLLSSNVNVDCWGGGTGEDKNLMSLLVESKDQMPTDSSIPLSPQWLHTKP
IDAKVPTAAASVEMHAPNSLSHGNSPDNLKNSWQLDGSQDKKDWRKISSDLEIKRSWREE
ERDTSLLGRRDRRKDDRGADAVSTRDISETRLLSSSDRWCDSNSRNSGHESWRDSKWSSR
WGPEDKEKNPRTEKRTYVEKEDSCTHKQTVVTGSRTASERENDSREKWRPRHRMEVHAGG
TAAYRSAPGFGSEKGRMEASAIRFAAGRGRSNSNGSISIAAHSSASASAIGSIPLDKNQS
YCYRRGKLLDIYRRQKDLPSFDTMPDGMENVASVTLEVAIKPLSLVAPDAEEEAFLGDIW
VGKIKSSGGLHNSLGDRNGGSENDYGVTSEGSLSSLVSTREIVESLRRVFVSDSCDSNGL
EISHTSITEEVCASKEGEQEHRMAAGGDGLMHAVMKKEDSSISQEIDPSHDFVELKALDN
QQVAELANMNHRQSEDFESVTSFEIGSQLPDDPSSLFDFPSGQKISNDQLKSNNEARSLR
SIMVPEELSLYYLDPQGEIQGPYLGIDIITWLEQGYFGTDLPVRMSDAPDGSPFHELGDI
MPHLKAKQGSVCSTPKLSDTVGGALEENVPSASDKNFHSGIQYTDEQSFQCFVAQDEEVL
LGVPGSNSGNPLMKHAADLRNLVSDASSHASLANEFSETHQGQNLHPFGLLMSELRGNSQ
LRHVQSSNISSSIGDQGQTMDPFSERDVAFRNHSSFGAVVDQPHAETCSDDYSQETLTNP
GIHIDSNDVHHLSHREQDISDFDLQHLILRNLQKEQLEQQNNFSPHSLSQASRLGIEEIP
SNILKLHFQQQQLELQQQQRLELQQQQWHLELQQQRRLELQQQQWLELQQQRQLELQQRR
QLELQHQRKLELQHQRKLELQQQRQLEIQQQQQRQQRQLELQKQKQLLQQQLHHHQMQLL
QQQQQEQQQLLFERMLQYQMSDLGYRQSKVDPMMDNLLDQVQFRMQLAEMQQSSNPSRHL
DPSLEQIIQAKVGLNASQEPQADFLDVLQSKHRNILPSNQFHFEQERLQAKQLSLALKQQ
LGMEVERHFSGPWSVGKACQLSQNSDDRRHSVSSGFDTSDFYQQQRLSSREEHLKWKGAL
HERRQHGLYEPSYMEFERSMSLPGVTPGIKLENVNDHRQGPDSTEHLYKQPADQLGPFSS
SNPFQCQQFSDDFSGSHPEATGHLPGKNGQSEKSWSEGGMQQLHLETQQLSKFPEAVNAS
IWAPTGPDEESSKRLLMEHQKLGIQSMKSSENDYQHLTLSSEPQDSLWPMKDLRLSNLPF
NHILGQEAAMNHSFMKGAQNLNSTSLLQENLVNAALSAQNGERLHSRSNSGVLIEEETFL
SGARDLSLTNYADGRFIGKSTMDKELPEMGRKGSIYGSRNMISMSMPVSQIEDNLVEQAG
TAMNFEGIPSRHSSLSSTGGTQSLYNYEMGNNLSSGEEVVNDSVHSTLTKGLDNTSHKRL
PVSRALSSQDGLSDLASASNVKQKSSTRFPTSNEKRHESEGNIVATSAGETQASGKKEMR
FRRTSSYSEATISETSFIDVLKRPVLYDADVANSAAALESSDGGLQAARSGKKKGKKGRQ
IDPALLGFKVSSNRILMGEIQRLED
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgggaagcttaccctgcctgacgatctcctctcatccaatgttaatgttgat
tgttggggtggaggaactggtgaggacaagaatctgatgagtttgcttgttgagtcaaaa
gatcaaatgccgacagatagcagcatacccctttctccacaatggcttcatactaaacca
attgatgctaaggtacctactgctgcagcatcagtggaaatgcatgcaccaaattctctg
tctcatgggaactcccctgacaatctaaaaaatagttggcagttagatggatcccaggat
aaaaaagactggagaaaaatttcatctgatcttgaaatcaaacgtagttggcgggaagag
gagagagatacaagtttacttggtagacgagatcgtagaaaggatgatcgtggtgctgat
gctgtgtcaacaagggacatttctgagactagattattgtcttcttcagatcgttggtgt
gatagtaatagccgtaattctgggcatgaatcttggagagatagcaaatggtcatcaagg
tggggtcctgaagataaggaaaagaatcctcggacagagaagagaacatatgttgagaag
gaagatagttgtacacacaagcaaactgttgttactggaagccgcacagcttctgagcgt
gagaatgactctcgagagaagtggaggccacgccaccgtatggaagttcatgcaggtgga
acagctgcatatcgaagtgcaccaggattcgggtcagaaaaaggacgcatggaagcatca
gctattcgatttgctgcagggcgaggaaggtcaaatagtaatggaagcatatcaattgca
gcacattcttctgcttccgcatctgctattgggtctattcctttagataaaaatcaatca
tactgctatcggaggggcaaacttctggatatttaccgaaggcagaaagatcttccaagt
tttgataccatgcctgatgggatggagaatgtagcctcagtaacactggaagttgctatt
aagccattgtctttagttgcccctgatgcagaggaagaagctttccttggagatatatgg
gtgggaaaaatcaaaagctctggaggtttgcacaactcgcttggtgacaggaatggggga
tcagaaaatgattatggagtgacaagtgagggaagtctgagttccttagttagtactcgt
gaaattgttgaatctcttagaagggtttttgttagtgattcctgtgatagtaatgggctt
gagatatcacatacatcaataactgaggaagtatgtgcttcaaaagaaggtgaacaagag
catagaatggcagctggtggtgatggcttgatgcatgcagttatgaaaaaagaagattcc
agcatttcccaggagattgaccccagtcatgattttgtggaattgaaagctcttgataac
cagcaagtggcagagttggctaatatgaatcatcgacagtcggaagattttgagtcggtt
acttcttttgaaattggtagtcagcttcctgatgatccaagttctctatttgatttccca
tctggacagaaaattagcaatgatcagttaaagagcaacaatgaggcacgctctttgaga
agcattatggttcctgaggagttatctttgtactatcttgatcctcaaggggaaatacag
gggccatacctcgggattgatattatcacatggttggagcaaggatattttggaactgat
ctacctgttcgcatgtcagatgcacctgatggatcaccctttcatgaacttggtgacatc
atgcctcatttgaaagctaaacaaggatctgtttgtagcactcccaagttatccgatact
gttggaggtgccttggaagaaaatgtaccttctgcttctgataagaactttcactctggg
attcagtacactgatgaacaaagcttccagtgttttgttgctcaggatgaagaagttctt
cttggagtacctggaagtaacagtggtaaccctttgatgaagcatgctgcagaccttcgg
aatttggtttccgatgcttcgagtcacgcttcccttgcaaatgaattctcagaaactcat
cagggtcagaatctgcatccatttggcctgttgatgtctgagctcagaggcaactctcag
ctgaggcatgttcagtcatccaatatatcttcaagcataggtgatcagggtcaaactatg
gatcctttctcagaaagggatgttgctttccgaaatcacagctcttttggtgcagtggtt
gatcaacctcatgcggagacatgttctgatgattatagccaagagactctcaccaaccct
ggcattcatatagattcaaatgatgttcatcacttatctcacagggagcaagacatcagt
gattttgacctacagcatctaattttacggaatctgcaaaaagaacaacttgagcaacag
aataatttttctccacattccctctcacaggcttccagattgggcattgaggaaattcct
tctaatattctgaaactgcattttcaacagcagcaattagagcttcaacagcaacagaga
ttggagcttcaacaacagcagtggcacttggagcttcagcagcagcgacggttggagctt
caacagcagcagtggttggagcttcaacagcagcgacaattggagcttcagcagcggcgg
cagttggagcttcagcaccagcgaaaattggagcttcagcaccagcgaaaattggagctt
cagcagcagcggcagttggagattcagcagcagcagcagcggcagcagcgacagttggaa
cttcagaagcagaagcagttactgcaacagcaacttcaccaccatcaaatgcagttgctg
cagcagcagcaacaagaacaacagcagttgctttttgaacgaatgctgcagtatcagatg
tctgatcttggttatagacaatcaaaggtggatcctatgatggataacttacttgatcaa
gttcagttcagaatgcagctggcagaaatgcaacagagttcaaatccttcgagacacctt
gatccatcactggagcaaattattcaagctaaggttggcttgaatgcttctcaagaacca
caggctgatttccttgatgtattgcagtcaaaacatagaaatatactcccttccaaccag
tttcattttgagcaagaacgtttgcaggcaaaacaattatctttggcactaaaacagcag
ttaggaatggaggtggaaagacattttagtgggccatggtctgttggtaaggcttgtcag
ctttcacagaattctgatgatcgtcgtcattctgtgtcttcaggatttgatacttcagat
ttctaccagcagcagaggctttcctcacgggaggagcatcttaaatggaaaggtgcttta
catgagcgacgtcagcatgggctttatgaacctagctatatggaatttgagaggtcaatg
tctcttcctggtgtcactcctgggataaagttggagaatgtaaatgatcatcgtcaaggt
cctgattcaacagaacatctctacaagcagcctgctgaccaattaggtcctttctcttct
agtaatcctttccagtgtcaacaattttcagatgatttttctggttctcacccagaagca
acggggcaccttcctggaaaaaatggacagtcagaaaagagttggagtgaaggagggatg
caacaactgcatcttgaaactcagcagctgagtaagtttccagaagctgtaaatgctagt
atttgggcgccaactggacctgatgaggaaagctcaaagagacttttgatggagcaccaa
aaactcggtattcaatctatgaagtcatcagaaaatgattatcaacatcttacattgtct
tctgaacctcaggattccttgtggccgatgaaggacttgaggctttcaaatcttcctttc
aatcacatcctaggccaagaagctgctatgaaccattcatttatgaaaggggcacaaaat
ttgaattcaacttctttattgcaagaaaatcttgtcaatgcagctttgagtgctcaaaat
ggtgaaagattgcactccaggtcaaattcaggagtactaattgaagaagagacattcttg
tcaggcgcaagagacctttctctcacaaattatgcggatggcagatttattggtaaatca
actatggacaaagagttgccagaaatgggaagaaagggaagtatatatgggtccagaaac
atgatttcaatgagcatgccagtttcccaaattgaagacaacttggttgagcaagcagga
actgcaatgaattttgaggggataccaagcaggcatagttcgctaagcagtactggtgga
actcaaagcttatacaattatgagatgggaaataatttatcatctggagaggaggttgtt
aatgatagtgtacattcaacattaaccaaagggcttgataacacttcacataaacgccta
cctgtatcacgggctttatcttcccaggatggtctgtcagacttagcctctgcctcaaat
gtcaagcagaaaagctcaacgaggtttccaacttctaatgaaaaaaggcacgagtctgag
gggaatattgtagcaacctcagcaggtgaaactcaggcatctgggaagaaagaaatgcgt
tttaggaggacgtcgtcttacagtgaggccactatatcagagacatcgttcatagatgtg
cttaaaaggccggttctctatgatgctgatgtagctaattcggctgctgctttggagtca
tctgatggtggtttgcaagcagctagaagtgggaaaaagaaagggaagaaaggaaggcag
atagatccggcactcctcggcttcaaggtttccagcaaccgaattctgatgggtgaaata
caacgcctggaagactga
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