Manihot esculenta (cassava): 110613121
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Entry
110613121 CDS
T05761
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03410
Base excision repair
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110613121
03410 Base excision repair
110613121
03420 Nucleotide excision repair
110613121
03430 Mismatch repair
110613121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesc03032
]
110613121
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110613121
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110613121
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110613121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
PTCB-BRCT
AAA_30
AAA_22
AAA_19
Rad17
BRCT_2
AAA_assoc_2
AAA_18
nSTAND3
RuvB_N
AAA_5
Zeta_toxin
AAA_24
AAA_14
Alpha_Helical
Sigma54_activ_2
SurA_N
TsaE
Gp44_lid
AAA_28
DNAX_ATPase_lid
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
110613121
NCBI-ProteinID:
XP_021609772
LinkDB
All DBs
Position
4:complement(15796815..15812828)
Genome browser
AA seq
984 aa
AA seq
DB search
MQRDIRKWLMKAHDKGNGNAAKPAQPAPTNTEKKPPLAESKPEPMQGDQENSGRRKTSKY
FAKDKQKPKDEKEMEEVPTKRNTQKDASVKPPPSKKIHKVDDSEDDDDFVLLHKNKSVDI
TPSKKLKTGSGRGVSQQPVGNAASDEDDVKDAESPLKPSGRGCGGRGGSSTSASRRGGST
TLAGGRGRGSGRGGFMNFGERKDPPRKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAE
DLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELGTPFLTEDGLFDMIRSSNAKAL
ARGDSMDPVRKVASMPKKSPHKAEDKLMSNSLKTNVNKKGSTTGGSPLKQKDQTMKHSSL
PWAEKYRPKAPNDIIGNQSLVNQLHSWLKNWNEQFLDTGNKGKSKKQNDSSAKKAVLLSG
TPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKADAKISKGIGGSNANCIKELVSNEALAV
NMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISRIPIICICNDRYSQKLKSLVNY
CLLLSFRKPTKQQMAKRLMQVANAEGLQVNEIALEEIAERVNGDMRMALNQLQYMSLSMS
VIKYDDVRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLITQEN
YINYRPSSIGKDESGMKRMSMLARAAESIANGDIVNVQIRRYRQWQLSQTGSLASCIIPA
ALLHGQRETLEPGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHLLASREFSSRRETLRLE
YLTVLLKQLTDPLRLLPKDEAVEKVVEFMNVYSISQEDTDTIVELSKFQGRKNPMDGIPS
AVKASLTRAYKEGNKSRMVRAADLVSLPGMKKAPKKRIAAILEPTEDGLAEKNGDAVVES
EGENSSDTDDLEATADGKNLQSELNSLNSKAIQVEMELKGTEDSNTKRTARGRGRGKAGS
STVEKKTAAKGKGEKAVSGSKRKR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagatattaggaaatggttgatgaaggcccatgacaaaggaaatggcaatgct
gccaagcctgcccaacctgccccaacaaatacagagaagaaacctcctctggctgagtca
aagcctgagcctatgcaaggagaccaagaaaattcaggcagaaggaaaactagcaagtac
tttgcgaaggacaaacaaaaaccaaaagatgagaaagaaatggaggaagttccaacaaag
agaaacactcaaaaagatgcatcagtgaaaccaccaccttcaaagaaaattcacaaagtt
gatgatagtgaagatgatgatgactttgttttgcttcataagaacaaatctgtagatatc
actcccagcaagaaactgaagactggttcaggtagaggagtttcccagcaacctgtaggc
aatgctgcaagtgatgaagatgatgttaaggatgctgaatctcctctcaagccaagtgga
agaggctgtggtggtaggggaggatcatcaacatcagctagcagaaggggtggatcaaca
acactggctggtggaaggggcagaggtagtggacggggtgggtttatgaattttggtgaa
aggaaagatcctccacgcaaaggagaaaaggaagttcctgaaggtgctcctgattgttta
gctggtctgacttttgtaattagcggaacgcttgacagtttagaaagagaagaagctgaa
gatttgattaaacggcatggtggtcgtgttactggatctgttagcaagaaaactaattat
ctcttatgcgatgaggatattgagggacggaaatctagcaaagcaaaagagcttggtact
cccttccttactgaggatggattatttgatatgatacggtcatcaaatgcaaaggctctt
gcacgtggtgattctatggaccctgtgaggaaagttgcttcaatgccaaagaaaagccct
cacaaagcagaggataagcttatgagcaactctttaaaaacaaatgtgaataagaaaggt
tcaactactggtgggtctcctctgaagcagaaagatcaaaccatgaaacattcttctctt
ccatgggcagaaaaatataggccaaaagctccaaatgatattattggcaatcagtcattg
gttaaccaacttcatagttggttgaaaaattggaatgaacagttccttgatactggaaat
aagggaaagagcaagaagcaaaatgattctagtgccaagaaagctgtgctattaagtggg
acaccaggtatagggaaaaccacatcagcaaagttggtcagccaaatgcttggtttccag
gcaattgaggtaaatgccagtgacaatcggggaaaagcagatgccaagattagtaaggga
attggtggaagtaatgcaaattgtataaaggaacttgtcagcaatgaagctttggctgtt
aacatggataggtcaaagcatccaaaaacagttttaatcatggatgaggtggacgggatg
tctgcaggcgatagaggtggagttgctgatcttattgctagcataaagatttccagaatt
cccattatctgtatttgtaacgatcgttatagtcagaagctaaaaagtctagtgaactac
tgcttgcttctcagtttccggaaacctacaaaacaacagatggcaaagaggttaatgcaa
gttgcaaatgcagaagggcttcaagttaatgagattgctctagaggaaattgcagaacgg
gtgaatggagatatgcgcatggcattaaatcaactgcaatatatgagtctctccatgtca
gtcattaagtatgatgatgttagacagcgacttcttagcagtgcaaaggacgaagatatt
tctccattcacagctgttgataagctttttggctttaatggaggtaagctaagaatggat
gagcgtattgaccttagcatgagtgatcctgatttggttcctctgataactcaggaaaat
tatattaattatcggccaagttcaattggtaaggatgaaagtgggatgaaaaggatgagc
atgcttgcccgtgctgccgagtctattgccaatggtgatatagtaaatgtgcagattcga
agatatcgacagtggcagctttctcaaactggttctcttgcttcctgcattattcctgct
gcactgttgcatggacaaagggagacacttgaaccgggagaaaggaactttaacaggttt
ggtgggtggctgggaaagaattcaacgatgggcaaaaatttgaggcttttggaggatttg
catgttcatcttcttgcttctcgtgagttcagttcgaggagggagactcttcgacttgaa
tatcttactgttcttttaaaacaattgactgatcctcttcggctgctgcctaaggatgaa
gctgttgagaaagttgtggagttcatgaatgtttactcaataagtcaggaagacactgac
actattgtggagttgtcaaaatttcaggggcgcaagaacccaatggatggcatcccatct
gctgtcaaagcatccctgacaagagcatataaagagggaaacaaatcaaggatggtacga
gctgcagacttggtctcacttcctggcatgaaaaaggcccctaagaagcgtattgcagca
atcctagaaccaactgaggatggtttagcagagaaaaatggtgacgcagtagtagaaagt
gaaggagaaaactcttctgacactgatgacttagaagcaactgctgatggcaagaacctc
cagtcagaacttaatagtttgaattcgaaagcaatccaagtagagatggaactaaaaggc
acagaagattcaaatactaagaggacagcaagaggcagaggcaggggaaaagctgggagc
tcaactgtggaaaaaaagacagcagcgaaaggaaaaggggagaaagctgtgtctggatca
aagagaaagagatga
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