Manihot esculenta (cassava): 110613445
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Entry
110613445 CDS
T05761
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110613445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110613445
03009 Ribosome biogenesis [BR:
mesc03009
]
110613445
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110613445
Spliceosome [BR:
mesc03041
]
Complex A
U2 snRNP components
U2 related factors
110613445
Complex B
110613445
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110613445
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
Helicases
110613445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
ResIII
SRP54
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
PhoH
AAA_33
T2SSE
TsaE
AAA_7
Motif
Other DBs
NCBI-GeneID:
110613445
NCBI-ProteinID:
XP_021610268
LinkDB
All DBs
Position
1:39506769..39511296
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AA seq
731 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISAKISKMNGAGGAAMNNNGNNNNLINRWTGKPYSQRYYEI
LEKRRTLPVWHQREEFLTALKKNQVLVLVGETGSGKTTQIPQFVLEAVDIETPDKRRKMM
IGCTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRNDLKLVVMSATLEAEKFQGYFNDA
PLMRVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
ITKEVGNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPLPLTEGGPAGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFNQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLG
ALDDDGNLTMLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFVNHRALKAADNVRQQLVRI
MARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYSEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPNCEAKRVLEKLYRKR
EREKEENKNRK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagagaaaagtgagcttgtttgatgtggtggacgagacttcgata
tcggcgaagatatcgaaaatgaacggcgctggtggagcggcgatgaataacaacggaaac
aataacaatttgataaatcggtggactgggaagccttattcacagaggtactatgaaatc
ttagaaaagaggaggactctgcctgtttggcaccaaagagaggagttcttgacggctttg
aagaaaaatcaggtccttgttcttgtcggtgagactggtagtggaaaaactactcagatt
cctcagtttgtcttggaagctgttgacatagaaacacctgacaaacgtaggaagatgatg
attggatgcacacagcctcgtagagtggctgcaatgtctgtttctcgacgtgtggcggaa
gagatggatgtgaatattggtgaagaagtcggttatagcatccgttttgaggattgtagc
agcgcaagaacagttttgaagtatttaactgatggtatgcttttaagagaagcaatgact
gatccacttttggaacgatacaaagttataattcttgatgaagctcatgaaagaactttg
gcaacagatgtattatttggactacttaaagaagttctaagaaatagaaatgatctgaag
ctagttgtgatgagtgcaacactagaggctgagaagtttcagggttattttaatgatgca
cctctgatgagggttcctggtagacttcatccagtggagattttctatacccaggaacct
gagagggattaccttgaggcagcaattcgtacagttgttcagatacatatgtacgaaact
cctggggacatactcgttttcctcacaggtgaggaggagatagaagatgcgtgccggaaa
ataacaaaggaggttggaaatatgggggaccaggtgggtccagtgaaggtagtgcctcta
tattctactcttccacctgccatgcagcagaaaatttttgagcctgctccactcccattg
actgaaggaggccctgctggaaggaagatagtagtttcaactaacatagcagaaacttct
ttgaccatagatggcattgtttatgttatcgacccagggtttgctaagcaaaaggtttac
aatcctcgagtgcgtgttgaatccttgttggtttccccaatatcaaaagcaagtgctcat
caaaggtctggccgtgctggaagaactcagccaggcaaatgcttcagactttatacagag
aaaagttttaatcaagatcttcagccacagacatatccagaaatactgcgatcgaaccta
gcaaatacagttctgacactgaagaaacttggaattgatgatttagtgcattttgatttt
atggacccgcctgctccagagacattgatgcgggcactagagatgctgaattacttggga
gcattggatgatgatgggaacttgacaatgcttggagaaatcatgagtgagtttcctttg
gatccacaaatgggaaagatgctggtggtcagtcctgaattcaactgctcaaatgagatc
ttgtcaatctctgcgatgctttcagtacccaattgctttgtccgccctagggaggctcaa
aaggctgctgatgaagcaaaagctaggtttgggcatattgatggggatcacctgacgctg
ttgaatgtgtatcatgcatacaagcagaacaatgaggattcatcttggtgctatgaaaat
tttgtcaaccatcgggctctcaaggctgctgataacgtgagacagcagcttgtacgcatc
atggcaaggtttaaccttaagttatgcagcacagacttcaacagccgtgactactatgtc
aacataagaaaggctatgctagctggatattttatgcaggtggcccacctagaacgcact
gggcactacctgacagtgaaagacaatcaagtggtgcatttacatccttcgaactgtctg
gatcacaagccggagtgggttatttatagtgagtatgtcctgacaagccggaattttatt
cgaacggtgacagatattcgtggtgaatggctagtagacatagcaccacactactatgat
ttagccaacttcccaaattgtgaggccaagcgagttctggagaagctttatcggaagcgg
gagagagagaaggaagagaacaagaacagaaagtga
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